[Home] | [Total List]

[172303_x_at]

Description W05H9.3 /REP_DB=WormBase Gene ID /WP=CE05038 /TR=Q23177 /GB=AAA81724.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 42      6grp_high1_10_10 > 25      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 31      6grp_total > 25      4grp_total > 12      6grp_highest_sub > 02      6grp_high1_sub > 01_02      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1313
1 2 3 4 range
A 997.9
(0.3)
P 		827.9
(-0.9)
P 		529.5
(-3)
P 		1388.9
(3)
P 		859
B 1037
(-0.4)
P 		615
(-2.3)
P 		470.5
(-3)
P 		1783.9
(3)
P 		1313
C 971.1
(-0.9)
P 		808.5
(-1.9)
P 		640.3
(-3)
P 		1598.6
(3)
P 		958
avr 1002
(-0.4) 		750.5
(-1.8) 		546.8
(-3) 		1590.5
(3) 		1044

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 937
1 2 3 4 5 6 range
A 1031.5
(3)
P 		771.2
(0.1)
P 		884.2
(1.4)
P 		589.9
(-1.8)
P 		649.9
(-1.2)
P 		484.9
(-3)
P 		547
B 1137.4
(1.2)
P 		1332.7
(3)
P 		1043.5
(0.4)
P 		770.7
(-2)
P 		663.8
(-3)
P 		838.9
(-1.4)
P 		669
C 1052.9
(2)
P 		1183.7
(3)
P 		479.8
(-2.4)
P 		838.4
(0.4)
P 		395.7
(-3)
P 		706.4
(-0.6)
P 		788
avr 1073.9
(2.7) 		1095.9
(3) 		802.5
(-0.3) 		733
(-1.1) 		569.8
(-3) 		676.7
(-1.8) 		526
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 271
1 2 3 4 range
A 363.3
(3)
P 		179.7
(-1.9)
P 		138.4
(-3)
P 		203.3
(-1.3)
P 		225
B 330.7
(1.9)
P 		151.9
(-2.1)
P 		109
(-3)
P 		380.2
(3)
P 		271
C 321.5
(3)
P 		232.4
(-2.4)
P 		223.2
(-3)
P 		269.6
(-0.2)
P 		98
avr 338.5
(3) 		188
(-2) 		156.9
(-3) 		284.4
(1.2) 		182

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 326
1 2 3 4 5 6 range
A 190.1
(-0.2)
P 		274.3
(3)
P 		192.6
(-0.1)
P 		149.6
(-1.8)
P 		196.1
(-0)
P 		118.1
(-3)
P 		156
B 395.8
(1.8)
P 		443.6
(3)
P 		253.4
(-1.8)
P 		204.1
(-3)
P 		269.7
(-1.4)
P 		312.8
(-0.3)
P 		240
C 390.3
(3)
P 		361.2
(2.3)
P 		122.1
(-3)
P 		168.6
(-2)
P 		128.1
(-2.9)
P 		236.5
(-0.4)
P 		268
avr 325.4
(1.9) 		359.7
(3) 		189.4
(-2.5) 		174.1
(-3) 		198
(-2.2) 		222.5
(-1.4) 		186
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172303_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16001
Sequence Type Exemplar sequence
Representative Public ID W05H9.3 NCBI
Target Description W05H9.3 /REP_DB=WormBase Gene ID /WP=CE05038 /TR=Q23177 /GB=AAA81724.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076647(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076647 NCBI Caenorhabditis elegans W05H9.3 (W05H9.3) mRNA, complete cds. 11/11 None
W05H9.3.2 ENSEMBL cdna:known chromosome:CEL140:X:6252427:6253086:1 gene:W05H9.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6252426-6252564(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W05H9.3
Entrez Gene 189229 Entrez gene
SwissProt Q23177 EMBL-EBI
WormBase CE05038 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81724 Hypothetical protein W05H9.3 [Caenorhabditis elegans] ref|NP_509048.1| W05H9.3 [Caenorhabditis elegans] 2.0E-18
Sequence
Target Sequence 
>C. ELEGANS:172303_X_AT
atgcaaattattctgccgaaagctatcttgccatgccatcaacttccattttcgtgtgtt
ttcggacaatctggagctggtcttcaatccgccaagaagctcgataag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCAAATTATTCTGCCGAAAGCTA 232 41 13 Antisense
TATTCTGCCGAAAGCTATCTTGCCA 108 665 21 Antisense
TCTGCCGAAAGCTATCTTGCCATGC 408 609 24 Antisense
CCATCAACTTCCATTTTCGTGTGTT 451 271 48 Antisense
CAACTTCCATTTTCGTGTGTTTTCG 156 185 52 Antisense
CATTTTCGTGTGTTTTCGGACAATC 588 213 59 Antisense
GTGTGTTTTCGGACAATCTGGAGCT 50 489 66 Antisense
AATCTGGAGCTGGTCTTCAATCCGC 166 169 80 Antisense
GCTGGTCTTCAATCCGCCAAGAAGC 186 295 88 Antisense
GGTCTTCAATCCGCCAAGAAGCTCG 150 503 91 Antisense
TCAATCCGCCAAGAAGCTCGATAAG 479 631 96 Antisense
Sequence Source Affymetrix Proprietary Database