[Home] | [Total List]

[172302_x_at]

Description F07E5.4 /REP_DB=WormBase Gene ID /WP=CE09216 /TR=P91221 /GB=AAB37900.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 95      4grp_total > 42      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 4.7
(-2.9)
A 		67
(3)
A 		28.8
(-0.6)
A 		3.3
(-3)
A 		64
B 4.9
(-3)
A 		24
(3)
A 		7
(-2.3)
A 		23.7
(2.9)
A 		19
C 17.3
(-1.8)
A 		15.5
(-3)
A 		17
(-2)
A 		24.8
(3)
A 		9
avr 9
(-3) 		35.5
(3) 		17.6
(-1.1) 		17.3
(-1.1) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 32.2
(1.8)
A 		6.3
(-3)
A 		10.2
(-2.3)
A 		24.5
(0.4)
A 		38.8
(3)
A 		20.9
(-0.3)
A 		33
B 4.3
(-2.5)
A 		14
(-0.4)
A 		4.2
(-2.6)
A 		2.2
(-3)
A 		28.3
(2.7)
A 		29.7
(3)
A 		28
C 23
(0.1)
P 		14.4
(-3)
A 		23.9
(0.4)
A 		31.2
(3)
A 		28.5
(2)
A 		29.1
(2.3)
P 		17
avr 19.8
(-0.6) 		11.6
(-3) 		12.8
(-2.6) 		19.3
(-0.7) 		31.9
(3) 		26.6
(1.4) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 1.7
(-2.5)
A 		14.5
(3)
A 		7.5
(0)
A 		0.5
(-3)
A 		14
B 1.6
(-3)
A 		5.9
(3)
A 		1.6
(-3)
A 		5.1
(1.9)
A 		4
C 5.7
(2.3)
A 		4.5
(-1.9)
A 		5.9
(3)
A 		4.2
(-3)
A 		2
avr 3
(-3) 		8.3
(3) 		5
(-0.7) 		3.3
(-2.7) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 5.9
(-0.7)
A 		2.2
(-3)
A 		2.2
(-3)
A 		6.2
(-0.5)
A 		11.7
(3)
A 		5.1
(-1.2)
A 		10
B 1.5
(-2.5)
A 		4.7
(-0.7)
A 		1
(-2.8)
A 		0.6
(-3)
A 		11.5
(3)
A 		11.1
(2.8)
A 		11
C 8.5
(1.6)
P 		4.4
(-3)
A 		6.1
(-1.1)
A 		6.3
(-0.8)
A 		9.2
(2.4)
A 		9.7
(3)
P 		5
avr 5.3
(-1.3) 		3.8
(-2.5) 		3.1
(-3) 		4.4
(-2) 		10.8
(3) 		8.6
(1.3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172302_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5011
Sequence Type Exemplar sequence
Representative Public ID F07E5.4 NCBI
Target Description F07E5.4 /REP_DB=WormBase Gene ID /WP=CE09216 /TR=P91221 /GB=AAB37900.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061765(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061765 NCBI Caenorhabditis elegans F07E5.4 (F07E5.4) mRNA, complete cds. 11/11 None
SNAP00000023363 ENSEMBL cdna:SNAP chromosome:CEL140:II:2050024:2051680:-1 11/11 None
F07E5.4 ENSEMBL cdna:known chromosome:CEL140:II:2050024:2051680:-1 gene:F07E5.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_070358 2/11 Cross Hyb Matching Probes A 
SNAP00000023368 1/11 Cross Hyb Matching Probes None
GENEFINDER00000023375 2/11 Cross Hyb Matching Probes None
GENEFINDER00000023380 5/11 Cross Hyb Matching Probes None
SNAP00000042427 2/11 Cross Hyb Matching Probes None
GENEFINDER00000042440 2/11 Cross Hyb Matching Probes None
T27E7.1 2/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2050022-2051679(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F07E5.4
Entrez Gene 184142 Entrez gene
SwissProt P91221 EMBL-EBI
WormBase CE09216 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37900 Hypothetical protein F07E5.4 [Caenorhabditis elegans] ref|NP_494166.1| F07E5.4 [Caenorhabditis elegans] 1.0E-43
blast CAB05287 Hypothetical protein T27E7.1 [Caenorhabditis elegans] ref|NP_502759.1| T27E7.1 [Caenorhabditis elegans] 3.0E-23
Sequence
Target Sequence 
>C. ELEGANS:172302_X_AT
atggctctgtcaagtgagcaggagggagagatgggagatgagagagaagagtttcagaca
agaggggtaggattggaagaggtcattgagcagatggtgagaccacttcaaaagattgtt
atggctggaaaagaccaggttcaagagtttggaggaaagaagccgccaagtggaaagtac
acgattgagctgatgggcaagaagattccgaatcatttgaagaagaagcgttcgctgttt
ggctcttcggaccgtactcgtcgtgcaacgttggtttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCTCTGTCAAGTGAGCAGGAGG 389 51 13 Antisense
GAAGAGTTTCAGACAAGAGGGGTAG 337 339 58 Antisense
GAGGGGTAGGATTGGAAGAGGTCAT 397 375 74 Antisense
GTCATTGAGCAGATGGTGAGACCAC 466 465 94 Antisense
GGTGAGACCACTTCAAAAGATTGTT 355 501 108 Antisense
GAAAAGACCAGGTTCAAGAGTTTGG 28 353 140 Antisense
GAAGCCGCCAAGTGGAAAGTACACG 640 341 171 Antisense
AAGTACACGATTGAGCTGATGGGCA 482 155 187 Antisense
GATGGGCAAGAAGATTCCGAATCAT 151 407 204 Antisense
AGAAGAAGCGTTCGCTGTTTGGCTC 183 75 233 Antisense
GTACTCGTCGTGCAACGTTGGTTTT 146 457 266 Antisense
Sequence Source Affymetrix Proprietary Database