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[172301_at]

Description W01H2.2 /REP_DB=WormBase Gene ID /WP=CE07561 /TR=O02045 /GB=AAB52886.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 52      4grp_total > 24      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 11.3
(-0.7)
A 		18.1
(3)
A 		12.5
(-0.1)
A 		7.1
(-3)
A 		11
B 13.7
(-3)
A 		18.8
(-1.3)
A 		31.2
(3)
A 		30.9
(2.9)
A 		18
C 11.1
(-3)
A 		18.5
(-1.6)
A 		17.9
(-1.7)
A 		43.1
(3)
A 		32
avr 12
(-3) 		18.5
(-0.4) 		20.5
(0.4) 		27
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 10.3
(-2.3)
A 		41.3
(2.9)
A 		10.7
(-2.3)
A 		41.8
(3)
A 		10.7
(-2.3)
A 		6.4
(-3)
A 		35
B 24
(-0.8)
A 		8.8
(-3)
A 		50.2
(3)
A 		13.5
(-2.3)
A 		10.7
(-2.7)
A 		11.7
(-2.6)
A 		41
C 29.4
(0.3)
A 		13.2
(-2.5)
A 		44.7
(3)
A 		10.5
(-3)
A 		14.4
(-2.3)
A 		23.3
(-0.8)
A 		34
avr 21.2
(-0.6) 		21.1
(-0.6) 		35.2
(3) 		21.9
(-0.4) 		11.9
(-3) 		13.8
(-2.5) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 4.1
(3)
A 		3.9
(2.6)
A 		3.3
(1.5)
A 		1
(-3)
A 		3
B 4.4
(-3)
A 		4.7
(-2.4)
A 		7.2
(3)
A 		6.6
(1.7)
A 		3
C 3.7
(-3)
A 		5.3
(-0.3)
A 		6.3
(1.3)
A 		7.3
(3)
A 		4
avr 4.1
(-3) 		4.6
(-1) 		5.6
(3) 		5
(0.6) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1.9
(-2.9)
A 		14.7
(3)
A 		2.3
(-2.7)
A 		10.6
(1.1)
A 		3.2
(-2.3)
A 		1.6
(-3)
A 		13
B 8.3
(0.5)
A 		2.9
(-3)
A 		12.2
(3)
A 		3.6
(-2.5)
A 		4.3
(-2.1)
A 		4.3
(-2.1)
A 		9
C 10.9
(2.7)
A 		4
(-1.8)
A 		11.4
(3)
A 		2.1
(-3)
A 		4.7
(-1.3)
A 		7.8
(0.7)
A 		9
avr 7
(0.9) 		7.2
(1.1) 		8.6
(3) 		5.4
(-1.3) 		4.1
(-3) 		4.6
(-2.3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172301_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16518
Sequence Type Exemplar sequence
Representative Public ID W01H2.2 NCBI
Target Description W01H2.2 /REP_DB=WormBase Gene ID /WP=CE07561 /TR=O02045 /GB=AAB52886.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076319(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076319 NCBI Caenorhabditis elegans W01H2.2 (W01H2.2) mRNA, complete cds. 11/11 None
W01H2.2 ENSEMBL cdna:known chromosome:CEL140:X:4218253:4218432:-1 gene:W01H2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4218253-4218433(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W01H2.2
Entrez Gene 189094 Entrez gene
SwissProt O02045 EMBL-EBI
WormBase CE07561 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52886 Hypothetical protein W01H2.2 [Caenorhabditis elegans] ref|NP_508720.1| W01H2.2 [Caenorhabditis elegans] 2.0E-29
Sequence
Target Sequence 
>C. ELEGANS:172301_AT
tgcgagagggagaggcttgccaaccaaacccacgtcgtctagtctgggagtgtgaaaaaa
aaaattttcgcccgcccgccgccgtcgcagcccgctgtcagttgagaaccaccagcggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCGAGAGGGAGAGGCTTGCCAACC 423 583 14 Antisense
GAGGGAGAGGCTTGCCAACCAAACC 369 401 19 Antisense
CCAAACCCACGTCGTCTAGTCTGGG 34 261 37 Antisense
AAACCCACGTCGTCTAGTCTGGGAG 51 1 39 Antisense
ACCCACGTCGTCTAGTCTGGGAGTG 389 89 41 Antisense
CCACGTCGTCTAGTCTGGGAGTGTG 41 275 43 Antisense
ACGTCGTCTAGTCTGGGAGTGTGAA 447 95 45 Antisense
GTCGTCTAGTCTGGGAGTGTGAAAA 234 473 47 Antisense
GTCTAGTCTGGGAGTGTGAAAAAAA 116 467 50 Antisense
CCCGCTGTCAGTTGAGAACCACCAG 422 261 104 Antisense
CTGTCAGTTGAGAACCACCAGCGGC 432 239 108 Antisense
Sequence Source Affymetrix Proprietary Database