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[172299_x_at]

Description F20B4.5 /REP_DB=WormBase Gene ID /WP=CE07104 /TR=Q19620 /GB=AAC48146.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 33      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 138
1 2 3 4 range
A 50.4
(-3)
A 		170.6
(3)
A 		150.6
(2)
A 		77.8
(-1.6)
A 		120
B 120.1
(-3)
A 		132.7
(0.1)
A 		120.7
(-2.9)
A 		144.7
(3)
M 		25
C 45.9
(-3)
A 		113.4
(-0.1)
A 		103.4
(-0.5)
A 		183.4
(3)
P 		138
avr 72.1
(-3) 		138.9
(3) 		124.9
(1.7) 		135.3
(2.7) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 516
1 2 3 4 5 6 range
A 39.1
(-3)
A 		53.3
(-2.8)
A 		83.8
(-2.4)
A 		196.8
(-1)
M 		515
(3)
P 		483.2
(2.6)
P 		476
B 91.1
(-2.1)
A 		11.6
(-3)
A 		88.4
(-2.1)
A 		211.6
(-0.7)
M 		527.2
(3)
P 		397.4
(1.5)
P 		516
C 74.9
(-2.1)
A 		13
(-3)
A 		63.9
(-2.2)
A 		127.2
(-1.3)
A 		418.3
(3)
P 		392.5
(2.6)
P 		405
avr 68.4
(-2.4) 		26
(-3) 		78.7
(-2.3) 		178.5
(-1) 		486.8
(3) 		424.4
(2.2) 		461
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 18.4
(-1.5)
A 		37
(2.5)
A 		39.4
(3)
A 		11.4
(-3)
A 		28
B 38.3
(3)
A 		32.8
(-0.2)
A 		28
(-3)
A 		30.8
(-1.4)
M 		10
C 15.2
(-3)
A 		32.6
(2)
A 		36
(3)
A 		30.9
(1.5)
P 		21
avr 24
(-3) 		34.1
(2.8) 		34.5
(3) 		24.4
(-2.8) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 210
1 2 3 4 5 6 range
A 7.2
(-3)
A 		18.9
(-2.5)
A 		18.3
(-2.6)
A 		49.9
(-1.3)
M 		155.4
(3)
P 		117.6
(1.5)
P 		148
B 31.7
(-2.2)
A 		3.9
(-3)
A 		21.5
(-2.5)
A 		56.1
(-1.5)
M 		214.2
(3)
P 		148.2
(1.1)
P 		210
C 27.8
(-1.9)
A 		4
(-3)
A 		16.3
(-2.4)
A 		25.6
(-2)
A 		135.4
(3)
P 		131.4
(2.8)
P 		131
avr 22.2
(-2.5) 		8.9
(-3) 		18.7
(-2.6) 		43.9
(-1.7) 		168.3
(3) 		132.4
(1.6) 		159
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172299_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17820
Sequence Type Exemplar sequence
Representative Public ID F20B4.5 NCBI
Target Description F20B4.5 /REP_DB=WormBase Gene ID /WP=CE07104 /TR=Q19620 /GB=AAC48146.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078460(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078460 NCBI Caenorhabditis elegans H11L12.1 (H11L12.1) mRNA, complete cds. 11/11 A 
GENEFINDER00000021875 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17710433:17711605:-1 11/11 None
SNAP00000021874 ENSEMBL cdna:SNAP chromosome:CEL140:X:17710466:17711583:-1 9/11 None
H11L12.1 ENSEMBL cdna:known chromosome:CEL140:X:17710395:17711583:-1 gene:H11L12.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_066830 4/11 Cross Hyb Matching Probes A 
NM_060522 7/11 Cross Hyb Matching Probes A 
SNAP00000039064 7/11 Cross Hyb Matching Probes None
GENEFINDER00000039065 7/11 Cross Hyb Matching Probes None
SNAP00000010163 4/11 Cross Hyb Matching Probes None
GENEFINDER00000010174 2/11 Cross Hyb Matching Probes None
C27C7.1 7/11 Cross Hyb Matching Probes A 
T16G12.3 4/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Ensembl H11L12.1
Entrez Gene 186723 Entrez gene
SwissProt Q9TYV1 EMBL-EBI
WormBase CE20957 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC78197 Hypothetical protein H11L12.1 [Caenorhabditis elegans] ref|NP_510861.1| H11L12.1 [Caenorhabditis elegans] 1.0E-119
blast AAC78197 Hypothetical protein H11L12.1 [Caenorhabditis elegans] ref|NP_510861.1| H11L12.1 [Caenorhabditis elegans] 1.0E-118
blast AAC78197 Hypothetical protein H11L12.1 [Caenorhabditis elegans] ref|NP_510861.1| H11L12.1 [Caenorhabditis elegans] 1.0E-116
blast CAB03931 Hypothetical protein C27C7.1 [Caenorhabditis elegans] ref|NP_492923.1| C27C7.1 [Caenorhabditis elegans] 1.0E-92
blast CAA82972 Hypothetical protein T16G12.3 [Caenorhabditis elegans] ref|NP_499231.2| T16G12.3 [Caenorhabditis elegans] 6.0E-92
blast CAA82972 Hypothetical protein T16G12.3 [Caenorhabditis elegans] ref|NP_499231.2| T16G12.3 [Caenorhabditis elegans] 7.0E-92
Sequence
Target Sequence 
>C. ELEGANS:172299_X_AT
gtcggacggtgagcccgaagaggacaaggtgaagctctgtggaaaccgcctggaagtcgg
agtcaccgacaatctggccggcactcagcgccgcaaggaacaacaacagctgcaaggcgc
tcaagccaagaagcagcaggccccacagcgcgatgtcaaccgcaaggccaaccatcaaaa
attatccaggaagcgtcgctatgctccgtacaaggatgatgtcactggagcaataatatg
tggtgatcacctccatccatatctattgtta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGGACGGTGAGCCCGAAGAGGAC 659 373 15 Antisense
AGGTGAAGCTCTGTGGAAACCGCCT 335 57 41 Antisense
ACCGCCTGGAAGTCGGAGTCACCGA 513 85 59 Antisense
GCACTCAGCGCCGCAAGGAACAACA 452 315 95 Antisense
AACAACAGCTGCAAGGCGCTCAAGC 218 135 116 Antisense
TCAAGCCAAGAAGCAGCAGGCCCCA 589 631 135 Antisense
CACAGCGCGATGTCAACCGCAAGGC 526 195 158 Antisense
CAACCGCAAGGCCAACCATCAAAAA 662 185 171 Antisense
TCCAGGAAGCGTCGCTATGCTCCGT 144 589 199 Antisense
ATATGTGGTGATCACCTCCATCCAT 456 21 250 Antisense
TCACCTCCATCCATATCTATTGTTA 81 627 261 Antisense
Sequence Source Affymetrix Proprietary Database