[Home] | [Total List]

[172298_x_at]

Description F49E2.5E /REP_DB=WormBase Gene ID /WP=CE16091 /TR=O45542 /GB=CAA86425.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 55      4grp_highest_8_8 > 60      4grp_high_8_8 > 25      6grp_total > 55      4grp_total > 38      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 408
1 2 3 4 range
A 835.8
(3)
P 		579.9
(-1.8)
P 		516.1
(-3)
P 		567.2
(-2)
P 		320
B 834
(3)
P 		582.8
(-3)
P 		668
(-1)
P 		766.4
(1.4)
P 		251
C 801.9
(3)
P 		703.1
(1.4)
P 		427.9
(-3)
P 		585.5
(-0.5)
P 		374
avr 823.9
(3) 		621.9
(-1.2) 		537.3
(-3) 		639.7
(-0.9) 		287

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 411
1 2 3 4 5 6 range
A 359.1
(-0.7)
P 		502.1
(3)
P 		430.9
(1.1)
P 		273.1
(-3)
P 		303.6
(-2.2)
P 		500.8
(3)
P 		229
B 501.3
(1.5)
P 		373.5
(-0.4)
P 		528
(1.9)
P 		401.4
(0)
P 		192.6
(-3)
M 		604
(3)
P 		411
C 375.4
(-1.3)
P 		462.7
(0.7)
P 		563.6
(3)
P 		299.4
(-3)
P 		320.4
(-2.5)
M 		488
(1.3)
P 		264
avr 411.9
(0.2) 		446.1
(1) 		507.5
(2.5) 		324.6
(-1.8) 		272.2
(-3) 		530.9
(3) 		259
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 221
1 2 3 4 range
A 304.3
(3)
P 		125.9
(-1.8)
P 		134.9
(-1.6)
P 		83
(-3)
P 		221
B 265.9
(3)
P 		143.9
(-3)
P 		154.8
(-2.5)
P 		163.3
(-2)
P 		122
C 265.4
(3)
P 		202.1
(0.7)
P 		149.1
(-1.2)
P 		98.7
(-3)
P 		167
avr 278.5
(3) 		157.3
(-1.4) 		146.3
(-1.9) 		115
(-3) 		164

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 165
1 2 3 4 5 6 range
A 66.2
(-3)
P 		178.6
(3)
P 		93.9
(-1.5)
P 		69.3
(-2.8)
P 		91.6
(-1.6)
P 		121.9
(-0)
P 		112
B 174.4
(0.9)
P 		124.3
(-1.1)
P 		128.2
(-1)
P 		106.3
(-1.9)
P 		78.2
(-3)
M 		225.2
(3)
P 		147
C 139.2
(1.6)
P 		141.2
(1.7)
P 		143.5
(1.8)
P 		60.2
(-3)
P 		103.7
(-0.5)
M 		163.4
(3)
P 		103
avr 126.6
(0.1) 		148
(1.5) 		121.9
(-0.2) 		78.6
(-3) 		91.2
(-2.2) 		170.2
(3) 		92
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172298_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16376
Sequence Type Exemplar sequence
Representative Public ID F49E2.5E NCBI
Target Description F49E2.5E /REP_DB=WormBase Gene ID /WP=CE16091 /TR=O45542 /GB=CAA86425.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029524(10), NM_077204(10), NM_001029523(10), NM_077208(10), NM_171968(10), NM_077209(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029524 NCBI Caenorhabditis elegans F49E2.5j (F49E2.5) mRNA, complete cds. 10/11 None
NM_077204 NCBI Caenorhabditis elegans F49E2.5a (F49E2.5) mRNA, complete cds. 10/11 A 
NM_001029523 NCBI Caenorhabditis elegans F49E2.5i (F49E2.5) mRNA, complete cds. 10/11 None
NM_077208 NCBI Caenorhabditis elegans F49E2.5f (F49E2.5) mRNA, complete cds. 10/11 A 
NM_171968 NCBI Caenorhabditis elegans F49E2.5g (F49E2.5) mRNA, complete cds. 10/11 A 
NM_077209 NCBI Caenorhabditis elegans F49E2.5e (F49E2.5) mRNA, complete cds. 11/11 A 
SNAP00000006377 ENSEMBL cdna:SNAP chromosome:CEL140:X:9552823:9559810:1 10/11 None
GENEFINDER00000006386 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9552823:9559810:1 10/11 None
F49E2.5a ENSEMBL cdna:known chromosome:CEL140:X:9552823:9559810:1 gene:F49E2.5 10/11 A 
F49E2.5e ENSEMBL cdna:known chromosome:CEL140:X:9552823:9558426:1 gene:F49E2.5 11/11 A 
F49E2.5f ENSEMBL cdna:known chromosome:CEL140:X:9552823:9555527:1 gene:F49E2.5 10/11 A 
F49E2.5g ENSEMBL cdna:known chromosome:CEL140:X:9552823:9555527:1 gene:F49E2.5 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_077205 2/11 Cross Hyb Matching Probes A 
F49E2.5d.1 2/11 Cross Hyb Matching Probes A 
F49E2.5d.2 2/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181175 10 6 NM_001029522 180309_s_at (10)
NM_001029523 171758_x_at (9), 172298_x_at (10), 180309_s_at (10)
NM_001029524 171758_x_at (9), 172298_x_at (10), 174674_at (11), 180098_s_at (11), 180309_s_at (10)
NM_077204 171758_x_at (9), 172298_x_at (10), 180309_s_at (10)
NM_077205 180309_s_at (10)
NM_077206 180309_s_at (10)
NM_077207 180309_s_at (10)
NM_077208 171758_x_at (9), 172298_x_at (10), 180098_s_at (11)
NM_077209 171758_x_at (10), 172298_x_at (11), 180098_s_at (11)
NM_171968 171758_x_at (9), 172298_x_at (10), 180098_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9552822-9555347(+) 96.11 100.0
Public Domain and Genome References
Ensembl F49E2.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAI79255 Hypothetical protein F49E2.5j [Caenorhabditis elegans] ref|NP_001024695.1| F49E2.5j [Caenorhabditis elegans] 0.0
blast CAA86429 Hypothetical protein F49E2.5b [Caenorhabditis elegans] ref|NP_509607.2| F49E2.5b [Caenorhabditis elegans] 0.0
blast CAH04746 Hypothetical protein F49E2.5h [Caenorhabditis elegans] ref|NP_001024693.1| F49E2.5h [Caenorhabditis elegans] 0.0
blast CAA86428 Hypothetical protein F49E2.5a [Caenorhabditis elegans] ref|NP_509605.2| F49E2.5a [Caenorhabditis elegans] 0.0
blast CAA86424 Hypothetical protein F49E2.5c [Caenorhabditis elegans] ref|NP_509608.2| F49E2.5c [Caenorhabditis elegans] 0.0
blast CAI79254 Hypothetical protein F49E2.5i [Caenorhabditis elegans] ref|NP_001024694.1| F49E2.5i [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 1.0E-126
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 6.1E-15
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 2.3E-7
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 9.2E-50
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 3.4E-10
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 1.0E-126
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 1.7E-95
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 6.1E-15
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 3.4E-10
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 7.4E-56
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 6.8E-50
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 1.0E-126
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 1.0E-126
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 6.1E-15
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 1.4E-15
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 2.3E-7
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 4.9E-32
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 9.7E-9
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 1.4E-15
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 2.3E-7
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 4.9E-32
Pfam IPR006836 EMBL-EBI Protein of unknown function DUF612 9.7E-9
Sequence
Target Sequence 
>C. ELEGANS:172298_X_AT
gagcaaccggtggaatctgctccagctccaccacaagttgaacaagttgttgagactacc
ccaccggcatctgaaaacaaaaagaaaaataagaaagacaagaagaagagtgaaagcgag
aaggctgttgaagagccagttcaagctgcgccctcatccaaaaagcctactgctgatgac
agcatggacttcttggactttgttactgctaaacctgaccgctccgaagtggcagctcca
gttgaggttgccaaggtagatgaatctaccgcagtcacctcagaaaacaggaaaaagaac
aagaaggacaagaaaaagagtgagagtgaaaaagcagttgaggagccagttcaggctgct
ccaacatccaaaaaaccaactgctgatgatagcatggactttttggatttcgtaactgct
aaggaagaacgtgttgaagaagtggctccagttcaagagcaagtaaaagagcaaaaggtg
atttcagatgaatgttttcttgttatgctatttgcacgagactcttgtccaatcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCAACCGGTGGAATCTGCTCCAG 379 391 1192 Antisense
TCCAGCTCCACCACAAGTTGAACAA 100 591 1212 Antisense
GAACAAGTTGTTGAGACTACCCCAC 634 351 1231 Antisense
TGAAGAGCCAGTTCAAGCTGCGCCC 344 575 1320 Antisense
GACAGCATGGACTTCTTGGACTTTG 185 369 1369 Antisense
TTTGTTACTGCTAAACCTGACCGCT 294 665 1390 Antisense
GCAGCTCCAGTTGAGGTTGCCAAGG 171 313 1423 Antisense
TAGATGAATCTACCGCAGTCACCTC 516 653 1448 Antisense
GAGGAGCCAGTTCAGGCTGCTCCAA 706 403 1531 Antisense
GCTGCTCCAACATCCAAAAAACCAA 90 297 1546 Antisense
TTGCACGAGACTCTTGTCCAATCCA 21 703 1703 Antisense
Sequence Source Affymetrix Proprietary Database