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[172297_x_at]

Description T23F11.2 /REP_DB=WormBase Gene ID /WP=CE01095 /TR=Q22694 /GB=CAA86457.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 88      6grp_total > 88      4grp_total > 03      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 293
1 2 3 4 range
A 88.7
(-0.4)
A 		42.4
(-3)
A 		117.6
(1.3)
A 		148.3
(3)
A 		106
B 107.6
(1.3)
A 		107.8
(1.3)
A 		26.3
(-3)
A 		140.2
(3)
P 		114
C 76.9
(-3)
M 		106.9
(-2.3)
M 		76.7
(-3)
A 		318.9
(3)
P 		242
avr 91.1
(-2.2) 		85.7
(-2.4) 		73.5
(-3) 		202.5
(3) 		129

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1358
1 2 3 4 5 6 range
A 94.4
(-2.9)
A 		76.2
(-3)
A 		133.9
(-2.7)
P 		166.1
(-2.6)
P 		779.5
(0.2)
P 		1412.1
(3)
P 		1336
B 87.6
(-2.8)
A 		64.3
(-2.9)
A 		54.6
(-3)
A 		136.2
(-2.5)
P 		778.4
(1.2)
P 		1095.7
(3)
P 		1041
C 82.9
(-3)
P 		114.2
(-2.8)
P 		102.1
(-2.9)
A 		190.4
(-2.3)
P 		610.3
(0.4)
P 		1021.8
(3)
P 		939
avr 88.3
(-3) 		84.9
(-3) 		96.9
(-2.9) 		164.2
(-2.6) 		722.7
(0.5) 		1176.5
(3) 		1092
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 32.3
(3)
A 		9.2
(-3)
A 		30.7
(2.6)
A 		21.7
(0.2)
A 		23
B 34.3
(3)
A 		26.6
(1.4)
A 		6.1
(-3)
A 		29.9
(2.1)
P 		28
C 25.5
(-3)
M 		30.7
(-1.9)
M 		26.7
(-2.7)
A 		53.8
(3)
P 		28
avr 30.7
(1.1) 		22.2
(-2.6) 		21.2
(-3) 		35.1
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 395
1 2 3 4 5 6 range
A 17.4
(-3)
A 		27.1
(-2.8)
A 		29.2
(-2.8)
P 		42.1
(-2.5)
P 		235.2
(1)
P 		343.8
(3)
P 		326
B 30.5
(-2.7)
A 		21.4
(-2.9)
A 		13.3
(-3)
A 		36.1
(-2.7)
P 		316.3
(1.6)
P 		408.6
(3)
P 		395
C 30.7
(-2.9)
P 		34.8
(-2.8)
P 		26
(-3)
A 		38.3
(-2.8)
P 		197.5
(0.3)
P 		342.1
(3)
P 		316
avr 26.2
(-2.9) 		27.8
(-2.9) 		22.8
(-3) 		38.8
(-2.7) 		249.7
(1) 		364.8
(3) 		342
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172297_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7385
Sequence Type Exemplar sequence
Representative Public ID T23F11.2 NCBI
Target Description T23F11.2 /REP_DB=WormBase Gene ID /WP=CE01095 /TR=Q22694 /GB=CAA86457.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065549(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065549 NCBI Caenorhabditis elegans T23F11.2 (T23F11.2) mRNA, complete cds. 11/11 A 
SNAP00000039543 ENSEMBL cdna:SNAP chromosome:CEL140:III:4654319:4655752:-1 11/11 None
GENEFINDER00000039551 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4654319:4655752:-1 11/11 None
T23F11.2 ENSEMBL cdna:known chromosome:CEL140:III:4654308:4655431:-1 gene:T23F11.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_065488 4/11 Cross Hyb Matching Probes A 
NM_001027372 6/11 Cross Hyb Matching Probes None
SNAP00000012145 6/11 Cross Hyb Matching Probes None
GENEFINDER00000012157 6/11 Cross Hyb Matching Probes None
GENEFINDER00000012860 4/11 Cross Hyb Matching Probes None
SNAP00000012847 4/11 Cross Hyb Matching Probes None
R07E5.15 4/11 Cross Hyb Matching Probes A 
F17C8.7 6/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4736363-4737167(+) 96.46 96.46
chrIII:4401492-4402408(+) 95.8 95.8
chrIII:4654318-4655365(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T23F11.2
Entrez Gene 175611 Entrez gene
SwissProt Q22694 EMBL-EBI
WormBase CE01095 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA86457 Hypothetical protein T23F11.2 [Caenorhabditis elegans] ref|NP_497950.1| T23F11.2 [Caenorhabditis elegans] 1.0E-132
blast CAA86457 Hypothetical protein T23F11.2 [Caenorhabditis elegans] ref|NP_497950.1| T23F11.2 [Caenorhabditis elegans] 1.0E-130
blast CAA83628 Hypothetical protein R07E5.15 [Caenorhabditis elegans] ref|NP_497889.1| R07E5.15 [Caenorhabditis elegans] 1.0E-127
blast CAE45044 Hypothetical protein F17C8.7 [Caenorhabditis elegans] ref|NP_001022543.1| F17C8.7 [Caenorhabditis elegans] 1.0E-126
blast CAA83628 Hypothetical protein R07E5.15 [Caenorhabditis elegans] ref|NP_497889.1| R07E5.15 [Caenorhabditis elegans] 1.0E-125
Sequence
Target Sequence 
>C. ELEGANS:172297_X_AT
tgtgaactcatcaaagctctcccaatgggacaagatgaatcttttgatcaaaggatacgt
gttgccgatctatgcgaagagcctcaagcagttcattgatcagaagaaaactgcaggaac
taaggagcaagaggcattctcattgtctgtcaagttcacggatcagttctcggctcccca
gacagtcatcaacttgccaggatatgccacgtgtatcgagtcgactgattatccggttga
cgtggaagaattggacactacaactgcagtcaacatcgaaagagatgtctccactgctgt
tccaattggttcaatgatgggatttgttgaggagtacaaacgtcgtcaattgaacaaagg
atgctggttttccaactacatctgtggaactgaaaagcaaccggagaagcagtcaatgag
atcttctcgtagatcaagccgttcgtcgaatcattctgcaaagagctcaaaggcttgccg
tattcaggctaata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTGAACTCATCAAAGCTCTCCCAA 249 557 210 Antisense
AAGGATACGTGTTGCCGATCTATGC 686 159 260 Antisense
GAGGCATTCTCATTGTCTGTCAAGT 464 405 340 Antisense
CAAGTTCACGGATCAGTTCTCGGCT 341 185 360 Antisense
CCCAGACAGTCATCAACTTGCCAGG 403 259 386 Antisense
TATGCCACGTGTATCGAGTCGACTG 347 657 412 Antisense
AAAGAGATGTCTCCACTGCTGTTCC 43 123 488 Antisense
ATGCTGGTTTTCCAACTACATCTGT 193 43 570 Antisense
TTCTCGTAGATCAAGCCGTTCGTCG 168 691 633 Antisense
GCCGTTCGTCGAATCATTCTGCAAA 184 285 647 Antisense
AAGGCTTGCCGTATTCAGGCTAATA 408 161 679 Antisense
Sequence Source Affymetrix Proprietary Database