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[172295_at]

Description W07G9.1 /REP_DB=WormBase Gene ID /WP=CE17298 /TR=O44894 /GB=AAB95056.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 30      4grp_total > 12      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 19.4
(-0.8)
A 		2.5
(-3)
A 		16.5
(-1.2)
A 		48.8
(3)
A 		46
B 12.2
(-1.6)
A 		30.4
(3)
A 		8.4
(-2.5)
A 		6.5
(-3)
A 		24
C 15.5
(-0.3)
A 		2.9
(-2.8)
A 		1.7
(-3)
A 		32.5
(3)
A 		31
avr 15.7
(-1) 		11.9
(-2.1) 		8.9
(-3) 		29.3
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 5.9
(-2)
A 		23.8
(2.1)
A 		27.6
(3)
A 		1.4
(-3)
A 		6.9
(-1.7)
A 		2.4
(-2.8)
A 		26
B 15.1
(2.2)
A 		7.3
(-0.8)
A 		1.5
(-3)
A 		16.3
(2.7)
A 		2.3
(-2.7)
A 		17.1
(3)
A 		16
C 1.2
(-3)
A 		14.2
(-0.6)
A 		16.6
(-0.1)
A 		33.1
(3)
A 		17
(-0)
A 		10.1
(-1.3)
A 		32
avr 7.4
(-3) 		15.1
(1.9) 		15.2
(1.9) 		16.9
(3) 		8.7
(-2.2) 		9.9
(-1.4) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 7
(2.9)
A 		0.5
(-3)
A 		4.3
(0.5)
A 		7.1
(3)
A 		7
B 3.9
(-0.5)
A 		7.5
(3)
A 		1.9
(-2.5)
A 		1.4
(-3)
A 		6
C 5.1
(2.5)
A 		0.8
(-2.8)
A 		0.6
(-3)
A 		5.5
(3)
A 		5
avr 5.3
(3) 		2.9
(-1.8) 		2.3
(-3) 		4.7
(1.8) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 1.1
(-2.5)
A 		8.5
(3)
A 		6
(1.1)
A 		0.4
(-3)
A 		2.1
(-1.7)
A 		0.6
(-2.9)
A 		8
B 5.2
(1.8)
A 		2.4
(-1)
A 		0.4
(-3)
A 		4.3
(0.9)
A 		0.9
(-2.5)
A 		6.4
(3)
A 		6
C 0.4
(-3)
A 		4.3
(0.7)
A 		4.2
(0.6)
A 		6.7
(3)
A 		5.5
(1.9)
A 		3.4
(-0.1)
A 		6
avr 2.2
(-3) 		5.1
(3) 		3.5
(-0.3) 		3.8
(0.3) 		2.8
(-1.8) 		3.5
(-0.3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172295_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11058
Sequence Type Exemplar sequence
Representative Public ID W07G9.1 NCBI
Target Description W07G9.1 /REP_DB=WormBase Gene ID /WP=CE17298 /TR=O44894 /GB=AAB95056.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) W07G9.1
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
W07G9.1 W07G9.1 /REP_DB=WormBase Gene ID /WP=CE17298 /TR=O44894 /GB=AAB95056.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3784928-3785436(-) 44.33 100.0
Sequence
Target Sequence 
>C. ELEGANS:172295_AT
gggagggctctatgtaagcaatttttatggtattttttactcctctaactctgaatcatc
aacgacgcttgttgacttctgcaaatataatgctgaaattgtagaacaaacaatattttt
ggaatttgtggaattttcgaatgaatctataatttttttgaaaaatttatattcaaaaat
ggtaaataattcaaattttaatattaaaaaaaaattttttcacaggaaaaattcagttac
agtttattca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGAGGGCTCTATGTAAGCAATTTT 639 493 15 Antisense
TATGGTATTTTTTACTCCTCTAACT 361 655 40 Antisense
TATTTTTTACTCCTCTAACTCTGAA 302 661 45 Antisense
TTTACTCCTCTAACTCTGAATCATC 387 673 50 Antisense
ACTCCTCTAACTCTGAATCATCAAC 287 97 53 Antisense
AACTCTGAATCATCAACGACGCTTG 561 139 61 Antisense
CAACGACGCTTGTTGACTTCTGCAA 261 187 74 Antisense
GACGCTTGTTGACTTCTGCAAATAT 224 381 78 Antisense
GTTGACTTCTGCAAATATAATGCTG 412 439 85 Antisense
GGAATTTTCGAATGAATCTATAATT 115 533 144 Antisense
GAAAAATTCAGTTACAGTTTATTCA 455 351 240 Antisense
Sequence Source Affymetrix Proprietary Database