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[172293_x_at]

Description Y26D4A.5 /REP_DB=WormBase Gene ID /WP=CE21486 /TR=Q9U2Q1 /GB=CAB54343.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 13      6grp_total > 22      4grp_total > 11      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 69.2
(2.2)
P 		30.7
(-3)
A 		54.4
(0.2)
A 		75.3
(3)
A 		45
B 53.1
(-2.4)
P 		66.7
(3)
P 		61.2
(0.8)
A 		51.5
(-3)
A 		15
C 57.4
(-2.1)
P 		76.3
(-0.9)
P 		43.6
(-3)
P 		137.1
(3)
P 		94
avr 59.9
(-1.8) 		57.9
(-2.2) 		53.1
(-3) 		88
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 67.8
(1.6)
A 		39.7
(-0.9)
M 		83.6
(3)
P 		36.5
(-1.2)
A 		65.2
(1.4)
A 		16.3
(-3)
A 		67
B 84.1
(3)
P 		78.1
(2.4)
P 		53.5
(-0.1)
A 		25.3
(-3)
A 		55.9
(0.1)
A 		26.4
(-2.9)
A 		59
C 48.5
(0.4)
P 		81.4
(3)
P 		56.9
(1.1)
A 		59.7
(1.3)
A 		4.5
(-3)
A 		14
(-2.3)
A 		77
avr 66.8
(3) 		66.4
(2.9) 		64.7
(2.7) 		40.5
(-0.3) 		41.9
(-0.1) 		18.9
(-3) 		48
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 25.2
(3)
P 		6.7
(-3)
A 		14.2
(-0.6)
A 		11
(-1.6)
A 		19
B 16.9
(3)
P 		16.5
(2.6)
P 		14.2
(0.3)
A 		11
(-3)
A 		6
C 19
(-0.1)
P 		21.9
(2.1)
P 		15.2
(-3)
P 		23.1
(3)
P 		8
avr 20.4
(3) 		15
(-2.5) 		14.5
(-3) 		15
(-2.5) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 12.5
(0.2)
A 		14.1
(0.9)
M 		18.2
(2.4)
P 		9.3
(-1)
A 		19.7
(3)
A 		4
(-3)
A 		16
B 29.3
(3)
P 		26
(2.1)
P 		13
(-1.3)
A 		6.7
(-3)
A 		22.7
(1.2)
A 		9.8
(-2.2)
A 		23
C 18
(1.2)
P 		24.8
(3)
P 		14.5
(0.3)
A 		12
(-0.3)
A 		1.5
(-3)
A 		4.7
(-2.2)
A 		23
avr 19.9
(2.3) 		21.6
(3) 		15.2
(0.5) 		9.3
(-1.8) 		14.6
(0.3) 		6.2
(-3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172293_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1744
Sequence Type Exemplar sequence
Representative Public ID Y26D4A.5 NCBI
Target Description Y26D4A.5 /REP_DB=WormBase Gene ID /WP=CE21486 /TR=Q9U2Q1 /GB=CAB54343.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060887(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060887 NCBI Caenorhabditis elegans Y26D4A.5 (Y26D4A.5) mRNA, complete cds. 11/11 None
Y26D4A.5 ENSEMBL cdna:known chromosome:CEL140:I:13084742:13086796:1 gene:Y26D4A.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13084672-13086727(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y26D4A.5
Entrez Gene 189546 Entrez gene
SwissProt Q9U2Q1 EMBL-EBI
WormBase CE21486 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54343 Hypothetical protein Y26D4A.5 [Caenorhabditis elegans] ref|NP_493288.1| Y26D4A.5 [Caenorhabditis elegans] 3.0E-64
Sequence
Target Sequence 
>C. ELEGANS:172293_X_AT
gtgatcattgtcttctacaacggatataagagggtagcattaatcgacccattgtacgac
cccgactccaaagcacaaccaattaagtttgagaaaatcaagttagtggcctactttggc
tgcttcgaaaaaagagtcgccctactcgatcccatgtacacaaccgaacccaaaacccca
atcaagctggaaaaaatcaagttcattccctactttggctgcttcgaaaaaagagtcgcc
ctactcgatcccatgtacacaaccgaacccaaaaccccaatcaagctggaaaaaatcaag
ttcattccctactttgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGATCATTGTCTTCTACAACGGAT 477 483 19 Antisense
GGTAGCATTAATCGACCCATTGTAC 595 499 51 Antisense
CCGACTCCAAAGCACAACCAATTAA 263 233 80 Antisense
GTTAGTGGCCTACTTTGGCTGCTTC 381 445 120 Antisense
GCCTACTTTGGCTGCTTCGAAAAAA 602 279 127 Antisense
GAAAAAAGAGTCGCCCTACTCGATC 312 351 145 Antisense
AATCAAGTTCATTCCCTACTTTGGC 648 171 213 Antisense
TCCCTACTTTGGCTGCTTCGAAAAA 585 589 225 Antisense
TACTCGATCCCATGTACACAACCGA 141 647 260 Antisense
GAACCCAAAACCCCAATCAAGCTGG 478 345 283 Antisense
AATCAAGTTCATTCCCTACTTTGGA 649 171 312 Antisense
Sequence Source Affymetrix Proprietary Database