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[172292_x_at]

Description D2092.8 /REP_DB=WormBase Gene ID /WP=CE09107 /TR=P91196 /GB=AAB42227.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 90      6grp_highest_nonorm > 81      6grp_total > 0      4grp_total > 49      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 545
1 2 3 4 range
A 75.2
(-3)
A 		607.7
(3)
P 		513.3
(1.9)
P 		164
(-2)
A 		533
B 67.2
(-3)
A 		548
(2.7)
P 		569.8
(3)
P 		100.7
(-2.6)
A 		503
C 79.8
(-3)
A 		611.9
(3)
P 		410.5
(0.7)
P 		116.6
(-2.6)
A 		532
avr 74.1
(-3) 		589.2
(3) 		497.9
(1.9) 		127.1
(-2.4) 		515

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 210
1 2 3 4 5 6 range
A 160.6
(-3)
P 		328.6
(3)
P 		242.7
(-0.1)
P 		238
(-0.2)
P 		250
(0.2)
P 		180.1
(-2.3)
P 		168
B 165.5
(-3)
P 		319.4
(3)
P 		225.3
(-0.7)
P 		204.6
(-1.5)
P 		312.9
(2.7)
P 		252.5
(0.4)
P 		154
C 230.6
(-1)
P 		346.7
(2.3)
P 		160.9
(-3)
P 		219.9
(-1.3)
P 		370.6
(3)
P 		242.2
(-0.7)
P 		210
avr 185.6
(-3) 		331.6
(3) 		209.6
(-2) 		220.8
(-1.6) 		311.2
(2.2) 		224.9
(-1.4) 		146
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 156
1 2 3 4 range
A 27.4
(-2.8)
A 		131.9
(2.9)
P 		134.2
(3)
P 		24
(-3)
A 		110
B 21.4
(-3)
A 		135.3
(3)
P 		132
(2.8)
P 		21.4
(-3)
A 		114
C 26.4
(-2.7)
A 		175.9
(3)
P 		143.1
(1.7)
P 		19.7
(-3)
A 		156
avr 25.1
(-2.8) 		147.7
(3) 		136.4
(2.5) 		21.7
(-3) 		126

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 29.6
(-3)
P 		116.9
(3)
P 		52.9
(-1.4)
P 		60.4
(-0.9)
P 		75.4
(0.1)
P 		43.8
(-2)
P 		87
B 57.6
(-2.7)
P 		106.3
(1.3)
P 		54.7
(-3)
P 		54.2
(-3)
P 		127.1
(3)
P 		94.2
(0.3)
P 		73
C 85.5
(0.4)
P 		105.8
(1.9)
P 		40.9
(-3)
P 		44.2
(-2.7)
P 		119.9
(3)
P 		81.1
(0.1)
P 		79
avr 57.6
(-2.2) 		109.7
(3) 		49.5
(-3) 		52.9
(-2.7) 		107.5
(2.8) 		73
(-0.7) 		60
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172292_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.508
Sequence Type Exemplar sequence
Representative Public ID D2092.8 NCBI
Target Description D2092.8 /REP_DB=WormBase Gene ID /WP=CE09107 /TR=P91196 /GB=AAB42227.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059504(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059504 NCBI Caenorhabditis elegans D2092.8 (D2092.8) mRNA, complete cds. 11/11 None
SNAP00000030848 ENSEMBL cdna:SNAP chromosome:CEL140:I:6627610:6629300:1 11/11 None
GENEFINDER00000030856 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6627610:6629300:1 11/11 None
D2092.8 ENSEMBL cdna:known chromosome:CEL140:I:6628799:6629360:1 gene:D2092.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6628857-6629229(+) 99.38 99.38
Public Domain and Genome References
Gene Title
Ensembl D2092.8
Entrez Gene 172380 Entrez gene
SwissProt P91196 EMBL-EBI
WormBase CE09107 Wormbase
Functional Annotations
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000030848 1 32-54
GENEFINDER00000030856 1 30-52
Sequence
Target Sequence 
>C. ELEGANS:172292_X_AT
tcttgcctgtcttccaggacttggaggacttggtggaggatgtggtggagccgctgcttc
tccatgtgctgctcctccaatgccaccaccagtttcctgtggaggaggatgtggagctgc
tccatacccagctggtccaatggctgctccatacttcgccccagcagccatcgctccacc
accaccaccacaaggagccgtgatcggagttggagctcagccagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTGCCTGTCTTCCAGGACTTGGA 85 619 57 Antisense
AGGACTTGGAGGACTTGGTGGAGGA 257 55 72 Antisense
TGGTGGAGGATGTGGTGGAGCCGCT 441 553 87 Antisense
GCCACCACCAGTTTCCTGTGGAGGA 59 281 138 Antisense
CACCAGTTTCCTGTGGAGGAGGATG 408 199 143 Antisense
GAGGAGGATGTGGAGCTGCTCCATA 454 403 158 Antisense
ATGTGGAGCTGCTCCATACCCAGCT 407 49 165 Antisense
TACCCAGCTGGTCCAATGGCTGCTC 366 649 181 Antisense
CCACCACAAGGAGCCGTGATCGGAG 558 273 241 Antisense
GCCGTGATCGGAGTTGGAGCTCAGC 629 283 253 Antisense
TGATCGGAGTTGGAGCTCAGCCAGC 2 567 257 Antisense
Sequence Source Affymetrix Proprietary Database