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[172291_x_at] --- /// --- /// ---

Description Y48A6B.8 /REP_DB=WormBase Gene ID /WP=CE19191 /TR=Q9XXC9 /GB=CAA19532.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 47      4grp_total > 04      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 422
1 2 3 4 range
A 85.6
(-1.3)
A 		31.5
(-2.6)
A 		12.2
(-3)
A 		276
(3)
P 		264
B 96.3
(-1.3)
A 		35.2
(-3)
A 		56.6
(-2.4)
A 		249.7
(3)
P 		215
C 76
(-2.4)
A 		38.7
(-3)
A 		45.7
(-2.9)
A 		434.4
(3)
P 		396
avr 86
(-1.9) 		35.1
(-3) 		38.2
(-2.9) 		320
(3) 		285

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 133
1 2 3 4 5 6 range
A 108.1
(0.3)
P 		142.1
(1.8)
P 		131.4
(1.3)
P 		36.7
(-3)
A 		57.3
(-2.1)
P 		168.5
(3)
P 		132
B 121.6
(2)
P 		105.8
(1.1)
P 		37.1
(-2.9)
A 		36
(-3)
A 		79.2
(-0.5)
P 		139.3
(3)
P 		103
C 129.5
(1.9)
P 		90.7
(-0.6)
P 		59.8
(-2.6)
A 		54
(-3)
A 		76.7
(-1.5)
M 		146.1
(3)
P 		92
avr 119.7
(1.3) 		112.9
(0.9) 		76.1
(-1.1) 		42.2
(-3) 		71.1
(-1.4) 		151.3
(3) 		109
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 31.2
(1.5)
A 		6.8
(-2.4)
A 		3.2
(-3)
A 		40.4
(3)
P 		37
B 30.7
(-0)
A 		8.7
(-3)
A 		13.1
(-2.4)
A 		53.2
(3)
P 		45
C 25.1
(-1.6)
A 		11.1
(-3)
A 		15.9
(-2.5)
A 		73.2
(3)
P 		62
avr 29
(-0.4) 		8.9
(-3) 		10.7
(-2.8) 		55.6
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 19.9
(-1.5)
P 		50.5
(3)
P 		28.6
(-0.2)
P 		9.3
(-3)
A 		17.3
(-1.8)
P 		41
(1.6)
P 		41
B 42.3
(1.7)
P 		35.2
(0.7)
P 		9
(-3)
A 		9.5
(-2.9)
A 		32.2
(0.2)
P 		51.9
(3)
P 		43
C 48
(2.9)
P 		27.7
(-0.3)
P 		15.2
(-2.3)
A 		10.9
(-3)
A 		24.8
(-0.8)
M 		48.9
(3)
P 		38
avr 36.7
(1.3) 		37.8
(1.5) 		17.6
(-1.8) 		9.9
(-3) 		24.8
(-0.6) 		47.3
(3) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172291_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7833
Sequence Type Exemplar sequence
Representative Public ID Y48A6B.8 NCBI
Target Description Y48A6B.8 /REP_DB=WormBase Gene ID /WP=CE19191 /TR=Q9XXC9 /GB=CAA19532.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064277(10), NM_071837(9), NM_067018(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064277 NCBI Caenorhabditis elegans F49C5.3 (F49C5.3) mRNA, complete cds. 10/11 A 
NM_071837 NCBI Caenorhabditis elegans Y61A9LA.4 (Y61A9LA.4) mRNA, complete cds. 9/11 A 
NM_067018 NCBI Caenorhabditis elegans Y48A6B.8 (Y48A6B.8) mRNA, complete cds. 11/11 A 
SNAP00000035411 ENSEMBL cdna:SNAP chromosome:CEL140:II:12535663:12538502:1 10/11 None
GENEFINDER00000035422 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12536406:12538502:1 10/11 None
SNAP00000033009 ENSEMBL cdna:SNAP chromosome:CEL140:III:11027211:11028228:-1 11/11 None
GENEFINDER00000033021 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11027211:11029314:-1 11/11 None
SNAP00000010094 ENSEMBL cdna:SNAP chromosome:CEL140:V:4557798:4572349:1 9/11 None
GENEFINDER00000010114 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4560656:4561553:1 10/11 None
F49C5.3 ENSEMBL cdna:known chromosome:CEL140:II:12536406:12538502:1 gene:F49C5.3 10/11 A 
Y48A6B.8 ENSEMBL cdna:known chromosome:CEL140:III:11027153:11029314:-1 gene:Y48A6B.8 11/11 A 
Y61A9LA.4 ENSEMBL cdna:known chromosome:CEL140:V:4560656:4561497:1 gene:Y61A9LA.4 9/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_058619 1/11 Cross Hyb Matching Probes A 
GENEFINDER00000025936 1/11 Cross Hyb Matching Probes None
F40E3.6 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12536402-12538499(+) 98.79 98.79
chrIII:11027206-11029310(-) 93.66 100.0
Public Domain and Genome References
Gene Title


Ensembl F49C5.3
Y48A6B.8
Y61A9LA.4
Entrez Gene 186014 Entrez gene
190012 Entrez gene
190444 Entrez gene
SwissProt O17878 EMBL-EBI
Q9XXC9 EMBL-EBI
Q9N315 EMBL-EBI
WormBase CE37917 Wormbase
CE19191 Wormbase
CE29131 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04432 Hypothetical protein F49C5.3 [Caenorhabditis elegans] ref|NP_496678.2| F49C5.3 [Caenorhabditis elegans] 0.0
blast CAA19532 Hypothetical protein Y48A6B.8 [Caenorhabditis elegans] ref|NP_499419.1| Y48A6B.8 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:172291_X_AT
gacgggtttcctacgtgtaatctcacagatatttataactctgaactcttgattggaggt
gatgccgtctcgcaactttcaaatttctatatggttgccttgaaaactatgctggagcct
tcttataaaatctgggcatttacttaccgaccaagctgtgttcgccgtgttgatagacat
tttcaagagttaccacaaaaagtgacaacagcgattattgaagtcgcattcgatattgtt
ggagtttatttgccggttgagctgtcatacggttcgattgatagggagcatgaattcatc
aaaacgcttggagaaggagcagaacttgaggttcagcgccgtagggacgaaagaatcaca
gtgttcaagaacgcagtagaagcccttggcaaagcaatgaacaatcttcgaacatatcac
tttgatattgccaaaggagcactattcaactgcaataaaccatcttattgcgagcatcat
ctcaagtggggacaggttcgaaagttcagagaacagcatcagaggatggaaacgtcacca
gaagaagttatcagatttgcaaccggtcaacgcaatgagcatgatgtctccgctgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGGGTTTCCTACGTGTAATCTCA 663 331 1042 Antisense
TGATTGGAGGTGATGCCGTCTCGCA 709 563 1091 Antisense
CCGTCTCGCAACTTTCAAATTTCTA 292 265 1106 Antisense
CTGGGCATTTACTTACCGACCAAGC 416 239 1173 Antisense
AGCTGTGTTCGCCGTGTTGATAGAC 584 81 1195 Antisense
GAGTTTATTTGCCGGTTGAGCTGTC 79 397 1283 Antisense
GTTGAGCTGTCATACGGTTCGATTG 229 439 1297 Antisense
GAACGCAGTAGAAGCCCTTGGCAAA 105 347 1410 Antisense
TAAACCATCTTATTGCGAGCATCAT 425 641 1497 Antisense
GAGCATCATCTCAAGTGGGGACAGG 602 387 1513 Antisense
GCAATGAGCATGATGTCTCCGCTGC 218 317 1613 Antisense
Sequence Source Affymetrix Proprietary Database