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[172290_x_at]

Description C53B7.6 /REP_DB=WormBase Gene ID /WP=CE06976 /TR=Q18808 /GB=AAC48278.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 72      4grp_total > 58      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 5.6
(-3)
A 		8.7
(-2)
A 		24
(3)
A 		8.9
(-1.9)
A 		18
B 4.3
(-2.7)
A 		16
(-1)
A 		42.5
(3)
A 		2.6
(-3)
A 		40
C 32.8
(0.7)
A 		51.3
(3)
A 		7.7
(-2.5)
A 		3.5
(-3)
A 		48
avr 14.2
(-0.3) 		25.3
(3) 		24.7
(2.8) 		5
(-3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 9.5
(-2.2)
A 		7.6
(-2.5)
A 		29.8
(1.2)
A 		4.7
(-3)
A 		40.6
(3)
A 		7
(-2.6)
A 		36
B 4
(-2.6)
A 		7.1
(-2.1)
A 		28.2
(1.9)
A 		33.9
(3)
A 		25.6
(1.4)
A 		2.1
(-3)
A 		32
C 6
(-2.6)
A 		51.7
(2.9)
A 		38.1
(1.3)
A 		52.4
(3)
A 		7.6
(-2.5)
A 		3.1
(-3)
A 		49
avr 6.5
(-2.5) 		22.1
(0.9) 		32
(3) 		30.3
(2.6) 		24.6
(1.4) 		4.1
(-3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 2
(-2.2)
A 		1.9
(-2.3)
A 		6.3
(3)
A 		1.3
(-3)
A 		5
B 1.4
(-2.5)
A 		3.9
(-0.9)
A 		9.9
(3)
A 		0.6
(-3)
A 		9
C 10.9
(1.4)
A 		14.7
(3)
A 		2.7
(-2.1)
A 		0.6
(-3)
A 		14
avr 4.8
(1) 		6.8
(3) 		6.3
(2.5) 		0.8
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 1.7
(-2.7)
A 		2.7
(-2.2)
A 		6.5
(-0.1)
A 		1.2
(-3)
A 		12.3
(3)
A 		1.7
(-2.7)
A 		11
B 1.4
(-2.6)
A 		2.3
(-2.1)
A 		6.9
(0.8)
A 		9
(2.1)
A 		10.4
(3)
A 		0.8
(-3)
A 		10
C 2.2
(-2.5)
A 		15.8
(3)
A 		9.7
(0.5)
A 		10.5
(0.9)
A 		2.5
(-2.4)
A 		1
(-3)
A 		15
avr 1.8
(-2.5) 		6.9
(1.8) 		7.7
(2.4) 		6.9
(1.8) 		8.4
(3) 		1.2
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172290_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16833
Sequence Type Exemplar sequence
Representative Public ID C53B7.6 NCBI
Target Description C53B7.6 /REP_DB=WormBase Gene ID /WP=CE06976 /TR=Q18808 /GB=AAC48278.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076757(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076757 NCBI Caenorhabditis elegans C53B7.6 (C53B7.6) mRNA, complete cds. 11/11 None
C53B7.6 ENSEMBL cdna:known chromosome:CEL140:X:6868584:6868721:-1 gene:C53B7.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_073510 5/11 Cross Hyb Matching Probes A 
SNAP00000013925 2/11 Cross Hyb Matching Probes None
T11F9.14 5/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11483284-11483422(-) 98.55 98.55
chrX:6868583-6868721(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C53B7.6
Entrez Gene 183745 Entrez gene
SwissProt Q18808 EMBL-EBI
WormBase CE06976 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC48278 Hypothetical protein C53B7.6 [Caenorhabditis elegans] ref|NP_509158.1| C53B7.6 [Caenorhabditis elegans] 2.0E-18
blast CAA98534 Hypothetical protein T11F9.14 [Caenorhabditis elegans] ref|NP_505911.1| T11F9.14 [Caenorhabditis elegans] 1.0E-17
Sequence
Target Sequence 
>C. ELEGANS:172290_X_AT
atgtattatattgcttcagccgacagtcaacagagtcaacgaggcagatcacaggccgaa
gccccagagttcttgacagagaagtgcccattcgttggagtgaagagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTATTATATTGCTTCAGCCGACA 46 49 13 Antisense
TATTGCTTCAGCCGACAGTCAACAG 356 665 21 Antisense
GCTTCAGCCGACAGTCAACAGAGTC 626 305 25 Antisense
CAGCCGACAGTCAACAGAGTCAACG 249 203 29 Antisense
GTCAACAGAGTCAACGAGGCAGATC 34 465 38 Antisense
GTCAACGAGGCAGATCACAGGCCGA 468 463 47 Antisense
CGAGGCAGATCACAGGCCGAAGCCC 69 249 52 Antisense
AAGCCCCAGAGTTCTTGACAGAGAA 574 149 71 Antisense
GACAGAGAAGTGCCCATTCGTTGGA 382 363 87 Antisense
GAGAAGTGCCCATTCGTTGGAGTGA 548 391 91 Antisense
GTGCCCATTCGTTGGAGTGAAGAGC 501 477 96 Antisense
Sequence Source Affymetrix Proprietary Database