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[172289_x_at]

Description W03D8.3 /REP_DB=WormBase Gene ID /WP=CE26953 /TR=O61214 /GB=AAK21498.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 0      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 70
(3)
A 		19.9
(-3)
A 		58.7
(1.6)
A 		63.2
(2.2)
A 		50
B 51.9
(3)
A 		24
(-3)
A 		39.8
(0.4)
A 		39.9
(0.4)
A 		28
C 27
(-3)
A 		68.3
(1.6)
A 		54.5
(0.1)
A 		81
(3)
A 		54
avr 49.6
(0.1) 		37.4
(-3) 		51
(0.4) 		61.4
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 168
1 2 3 4 5 6 range
A 16.4
(-2.5)
A 		45.6
(-0.8)
A 		7.5
(-3)
A 		54.5
(-0.3)
A 		112.1
(3)
M 		96.1
(2.1)
M 		105
B 66.1
(-1.4)
A 		56.5
(-2)
A 		41.6
(-3)
A 		66.1
(-1.4)
A 		99
(0.7)
M 		133.5
(3)
P 		92
C 44.1
(-2.7)
A 		36.7
(-3)
A 		62.5
(-1.9)
A 		92.3
(-0.6)
A 		88.6
(-0.8)
A 		175.9
(3)
P 		139
avr 42.2
(-2.7) 		46.3
(-2.4) 		37.2
(-3) 		71
(-0.9) 		99.9
(0.8) 		135.2
(3) 		98
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 25.5
(3)
A 		4.3
(-3)
A 		15.3
(0.1)
A 		9.3
(-1.6)
A 		21
B 16.6
(3)
A 		5.9
(-3)
A 		9.2
(-1.1)
A 		8.5
(-1.5)
A 		11
C 8.9
(-3)
A 		19.6
(3)
A 		19
(2.7)
A 		13.7
(-0.3)
A 		11
avr 17
(3) 		9.9
(-3) 		14.5
(0.9) 		10.5
(-2.5) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 3
(-2.7)
A 		16.2
(-0.3)
A 		1.6
(-3)
A 		13.8
(-0.7)
A 		33.8
(3)
M 		23.4
(1.1)
M 		32
B 23
(-1.1)
A 		18.8
(-1.7)
A 		10.1
(-3)
A 		17.5
(-1.9)
A 		40.2
(1.5)
M 		49.8
(3)
P 		40
C 16.3
(-2.4)
A 		11.2
(-3)
A 		15.9
(-2.4)
A 		18.6
(-2.1)
A 		28.7
(-0.8)
A 		58.9
(3)
P 		48
avr 14.1
(-2.2) 		15.4
(-1.9) 		9.2
(-3) 		16.6
(-1.7) 		34.2
(1.3) 		44
(3) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172289_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.170
Sequence Type Exemplar sequence
Representative Public ID W03D8.3 NCBI
Target Description W03D8.3 /REP_DB=WormBase Gene ID /WP=CE26953 /TR=O61214 /GB=AAK21498.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058651(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058651 NCBI Caenorhabditis elegans W03D8.3 (W03D8.3) mRNA, complete cds. 11/11 None
SNAP00000016961 ENSEMBL cdna:SNAP chromosome:CEL140:I:2820870:2822086:-1 11/11 None
W03D8.3 ENSEMBL cdna:known chromosome:CEL140:I:2820870:2822086:-1 gene:W03D8.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2820869-2822086(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W03D8.3
Entrez Gene 171848 Entrez gene
SwissProt O61214 EMBL-EBI
WormBase CE26953 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491052 W03D8.3 [Caenorhabditis elegans] gb|AAK21498.1| Hypothetical protein W03D8.3 [Caenorhabditis elegans] 5.0E-21
blast T32932 hypothetical protein W03D8.3 - Caenorhabditis elegans 2.0E-14
blast NP_491140 W01B11.1 [Caenorhabditis elegans] gb|AAK21474.1| Hypothetical protein W01B11.1 [Caenorhabditis elegans] 4.0E-14
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491052.1 1 107-129
W03D8.3 1 107-129
SNAP00000016961 1 107-129
Sequence
Target Sequence 
>C. ELEGANS:172289_X_AT
atgggtgacgacgcttacgagtttttggctccagatttacttgccccaccaccaccatct
caacaaccggcagcagttgctccgagagcaccacgcccagcacctggacatcccgctccg
acgaatgagcttccacctgtgtcgccggcccaaaaaggatcgaagagcaaatcgaaccaa
tcatcgggtgacaattcaaaggacaagaagaaaaagcgtacaaagcgttcgggtggctca
aaatcgaaagaatcctccgagccaccaccatcattgtccgccttcaagtggcaaatggcg
atcagtgcgcttcttgtcttcagttcagttgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGGTGACGACGCTTACGAGTTTT 135 49 13 Antisense
GACGCTTACGAGTTTTTGGCTCCAG 330 381 22 Antisense
TTTGGCTCCAGATTTACTTGCCCCA 36 665 36 Antisense
TCAACAACCGGCAGCAGTTGCTCCG 506 629 72 Antisense
ACATCCCGCTCCGACGAATGAGCTT 634 105 120 Antisense
GTGTCGCCGGCCCAAAAAGGATCGA 524 487 151 Antisense
GCGTACAAAGCGTTCGGGTGGCTCA 568 287 228 Antisense
AATCGAAAGAATCCTCCGAGCCACC 623 167 254 Antisense
CCATCATTGTCCGCCTTCAAGTGGC 136 271 280 Antisense
AATGGCGATCAGTGCGCTTCTTGTC 104 163 306 Antisense
GCTTCTTGTCTTCAGTTCAGTTGTT 390 305 321 Antisense
Sequence Source Affymetrix Proprietary Database