[Home] | [Total List]

[172288_x_at]

Description B0379.7A /REP_DB=WormBase Gene ID /WP=CE18486 /TR=Q9XU46 /GB=CAB05894.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 18      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 47.9
(-0.1)
A 		40.9
(-0.7)
A 		16
(-3)
A 		82.2
(3)
A 		66
B 21.7
(-3)
A 		68.7
(-0.3)
A 		56.1
(-1)
A 		125.3
(3)
A 		104
C 5.9
(-3)
A 		13.9
(-2.5)
A 		6.8
(-2.9)
A 		102.7
(3)
A 		97
avr 25.2
(-3) 		41.2
(-1.8) 		26.3
(-2.9) 		103.4
(3) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 296
1 2 3 4 5 6 range
A 58.2
(-2)
A 		21.5
(-2.7)
A 		8.3
(-3)
A 		46.9
(-2.2)
A 		105.6
(-1)
A 		301.9
(3)
P 		294
B 25
(-2.5)
A 		51.9
(-1.8)
A 		38.9
(-2.1)
A 		6.2
(-3)
A 		113.4
(-0.1)
A 		227.3
(3)
P 		221
C 6.5
(-3)
A 		29.1
(-2.3)
A 		25.7
(-2.4)
A 		48.3
(-1.8)
A 		138.2
(0.8)
A 		212.4
(3)
P 		206
avr 29.9
(-2.8) 		34.2
(-2.7) 		24.3
(-3) 		33.8
(-2.7) 		119.1
(-0.4) 		247.2
(3) 		223
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 17.4
(3)
A 		8.9
(-0.9)
A 		4.2
(-3)
A 		12
(0.5)
A 		13
B 6.9
(-3)
A 		17
(0.1)
A 		13
(-1.2)
A 		26.7
(3)
A 		20
C 1.9
(-3)
A 		4
(-2.2)
A 		2.4
(-2.8)
A 		17.3
(3)
A 		15
avr 8.7
(-1.9) 		10
(-1.3) 		6.5
(-3) 		18.7
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 10.7
(-2.3)
A 		7.6
(-2.5)
A 		1.8
(-3)
A 		11.9
(-2.2)
A 		31.9
(-0.5)
A 		73.5
(3)
P 		72
B 8.7
(-2.5)
A 		17.3
(-1.9)
A 		9.4
(-2.4)
A 		1.6
(-3)
A 		46.1
(0.2)
A 		84.8
(3)
P 		83
C 2.4
(-3)
A 		8.9
(-2.4)
A 		6.5
(-2.6)
A 		9.7
(-2.4)
A 		44.7
(0.7)
A 		71.1
(3)
P 		69
avr 7.3
(-2.9) 		11.3
(-2.5) 		5.9
(-3) 		7.7
(-2.8) 		40.9
(-0) 		76.5
(3) 		71
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172288_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1518
Sequence Type Exemplar sequence
Representative Public ID B0379.7A NCBI
Target Description B0379.7A /REP_DB=WormBase Gene ID /WP=CE18486 /TR=Q9XU46 /GB=CAB05894.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170916(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170916 NCBI Caenorhabditis elegans B0379.7 (B0379.7) mRNA, complete cds. 11/11 A 
GENEFINDER00000021514 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10079043:10082149:-1 11/11 None
SNAP00000021507 ENSEMBL cdna:SNAP chromosome:CEL140:I:10080745:10082149:-1 11/11 None
B0379.7.1 ENSEMBL cdna:known chromosome:CEL140:I:10080729:10082507:-1 gene:B0379.7 11/11 A 
B0379.7.2 ENSEMBL cdna:known chromosome:CEL140:I:10080729:10082183:-1 gene:B0379.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10080675-10082080(-) 95.62 100.0
Public Domain and Genome References
Gene Title
Ensembl B0379.7
Entrez Gene 172871 Entrez gene
SwissProt Q9U3S6 EMBL-EBI
WormBase CE23508 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54186 Hypothetical protein B0379.7 [Caenorhabditis elegans] ref|NP_740910.1| B0379.7 [Caenorhabditis elegans] 1.0E-118
blast T18723 hypothetical protein B0379.7 - Caenorhabditis elegans 1.0E-116
blast T18723 hypothetical protein B0379.7 - Caenorhabditis elegans 1.0E-115
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_740910.1 1 2-18
B0379.7.1 1 2-18
B0379.7.2 1 2-18
GENEFINDER00000021514 1 2-18
SNAP00000021507 1 2-18
Sequence
Target Sequence 
>C. ELEGANS:172288_X_AT
aagagcacatctacttctgagcctccaactccaaatcaaccggaaactggagttcaaact
gccaacgaacttcgtaacgatgctcctgaatcaaatgtgaacactgccatgtcaatccaa
tctccagttcaagatactccagaacctgatgtcaaaaccgcttctgaagccaaaaacgac
attccagaatctggtgtgaagactgctgcagaggtaaagaatgatgttcctgaatcagga
gtcaagactgccgccgaagcaaagaacgatgcttttgagagtgatgttaagtctgcaatc
gaggcaaaatctgatgcaccagaatctgacgtgaagactgcaattgaacttggtggagaa
cagaagagcggatcgactgcgagcagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGAGCACATCTACTTCTGAGCCTC 56 155 796 Antisense
TCCAACTCCAAATCAACCGGAAACT 298 583 819 Antisense
TTCAAACTGCCAACGAACTTCGTAA 105 685 848 Antisense
ACTTCGTAACGATGCTCCTGAATCA 469 101 864 Antisense
ATGTGAACACTGCCATGTCAATCCA 220 49 890 Antisense
TGTCAATCCAATCTCCAGTTCAAGA 654 557 905 Antisense
GAACCTGATGTCAAAACCGCTTCTG 354 345 937 Antisense
GAATCTGGTGTGAAGACTGCTGCAG 505 329 982 Antisense
GAATCAGGAGTCAAGACTGCCGCCG 224 327 1027 Antisense
GACTGCCGCCGAAGCAAAGAACGAT 600 373 1041 Antisense
GAAGAGCGGATCGACTGCGAGCAGT 292 339 1158 Antisense
Sequence Source Affymetrix Proprietary Database