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[172287_x_at]

Description H04D03.1 /REP_DB=WormBase Gene ID /WP=CE16165 /TR=O45607 /GB=CAA15958.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 99      4grp_high_8_8 > 07      6grp_total > 96      4grp_total > 04      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 147
1 2 3 4 range
A 87.8
(-2.4)
P 		81.3
(-2.7)
A 		75
(-3)
A 		210.3
(3)
P 		135
B 111.1
(0.9)
P 		63.6
(-3)
A 		64.9
(-2.9)
A 		137.5
(3)
A 		74
C 101.2
(-1.3)
P 		70.7
(-3)
P 		120.8
(-0.2)
P 		177
(3)
P 		106
avr 100
(-1.4) 		71.9
(-3) 		86.9
(-2.1) 		174.9
(3) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 126
1 2 3 4 5 6 range
A 143.3
(-1.1)
P 		143.1
(-1.1)
M 		107.6
(-3)
P 		147.7
(-0.9)
P 		199.5
(1.9)
P 		219.9
(3)
P 		112
B 94.1
(-3)
P 		112.3
(-1.9)
P 		136.5
(-0.5)
P 		126.6
(-1.1)
P 		195.8
(3)
P 		188
(2.5)
P 		102
C 108.4
(-2.3)
P 		97.4
(-3)
P 		166.2
(1.1)
M 		165.9
(1.1)
P 		197
(3)
P 		185.5
(2.3)
P 		100
avr 115.3
(-3) 		117.6
(-2.8) 		136.8
(-1.4) 		146.7
(-0.7) 		197.4
(3) 		197.8
(3) 		83
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 32
(3)
P 		17.6
(-3)
A 		19.6
(-2.2)
A 		30.8
(2.5)
P 		14
B 35.4
(3)
P 		15.7
(-2.8)
A 		15
(-3)
A 		29.3
(1.2)
A 		20
C 33.5
(0.6)
P 		20.3
(-3)
P 		42.1
(3)
P 		29.8
(-0.4)
P 		22
avr 33.6
(3) 		17.9
(-3) 		25.6
(-0.1) 		30
(1.6) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 26.4
(-2.5)
P 		50.9
(1.5)
M 		23.4
(-3)
P 		37.4
(-0.7)
P 		60.2
(3)
P 		53.5
(1.9)
P 		37
B 32.8
(-3)
P 		37.4
(-2.4)
P 		33.1
(-3)
P 		33.5
(-2.9)
P 		79.6
(3)
P 		70.1
(1.8)
P 		47
C 40.2
(-1.1)
P 		29.7
(-3)
P 		42.3
(-0.8)
M 		33.4
(-2.3)
P 		63.7
(3)
P 		62.1
(2.7)
P 		34
avr 33.1
(-3) 		39.3
(-1.9) 		32.9
(-3) 		34.8
(-2.7) 		67.8
(3) 		61.9
(2) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172287_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7586
Sequence Type Exemplar sequence
Representative Public ID H04D03.1 NCBI
Target Description H04D03.1 /REP_DB=WormBase Gene ID /WP=CE16165 /TR=O45607 /GB=CAA15958.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066901(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066901 NCBI Caenorhabditis elegans H04D03.1 (H04D03.1) mRNA, complete cds. 11/11 A 
GENEFINDER00000026569 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10436654:10437440:1 11/11 None
SNAP00000026562 ENSEMBL cdna:SNAP chromosome:CEL140:III:10436772:10437440:1 11/11 None
H04D03.1 ENSEMBL cdna:known chromosome:CEL140:III:10436491:10437602:1 gene:H04D03.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_058747 4/11 Cross Hyb Matching Probes A 
NM_059086 5/11 Cross Hyb Matching Probes A 
NM_065584 5/11 Cross Hyb Matching Probes A 
NM_065585 5/11 Cross Hyb Matching Probes A 
NM_067277 5/11 Cross Hyb Matching Probes A 
NM_067278 5/11 Cross Hyb Matching Probes A 
SNAP00000029373 4/11 Cross Hyb Matching Probes None
GENEFINDER00000029381 4/11 Cross Hyb Matching Probes None
SNAP00000033390 5/11 Cross Hyb Matching Probes None
GENEFINDER00000033405 5/11 Cross Hyb Matching Probes None
SNAP00000028780 5/11 Cross Hyb Matching Probes None
GENEFINDER00000028814 5/11 Cross Hyb Matching Probes None
SNAP00000018662 5/11 Cross Hyb Matching Probes None
GENEFINDER00000018676 5/11 Cross Hyb Matching Probes None
W05F2.2a 4/11 Cross Hyb Matching Probes A 
W03G9.3 5/11 Cross Hyb Matching Probes A 
C38D4.1a 5/11 Cross Hyb Matching Probes A 
C38D4.1b 5/11 Cross Hyb Matching Probes A 
Y37D8A.12a.1 5/11 Cross Hyb Matching Probes A 
Y37D8A.12a.2 5/11 Cross Hyb Matching Probes A 
Y37D8A.12b 5/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10436649-10437436(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H04D03.1
Entrez Gene 176463 Entrez gene
SwissProt O45607 EMBL-EBI
WormBase CE16165 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA15958 Hypothetical protein H04D03.1 [Caenorhabditis elegans] ref|NP_499302.1| H04D03.1 [Caenorhabditis elegans] 1.0E-83
blast CAA15958 Hypothetical protein H04D03.1 [Caenorhabditis elegans] ref|NP_499302.1| H04D03.1 [Caenorhabditis elegans] 4.0E-83
blast NP_491148 W05F2.2a [Caenorhabditis elegans] gb|AAC78213.1| Hypothetical protein W05F2.2 [Caenorhabditis elegans] 7.0E-64
blast NP_491487 W03G9.3 [Caenorhabditis elegans] gb|AAB96737.1| Hypothetical protein W03G9.3 [Caenorhabditis elegans] 7.0E-64
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499302.1 2 7-29,109-128
H04D03.1 2 7-29,109-128
GENEFINDER00000026569 2 7-29,109-128
SNAP00000026562 1 89-108
Sequence
Target Sequence 
>C. ELEGANS:172287_X_AT
ccacaccaaatgtgcctgtttccgccgctacgaacacttcaaacgtgaccgctcctgccg
gcaattcgacaaaaagtcctaatgcgaccgctcctgccggtaattcgacgaaaaatgtaa
acgtgaccgctctttccgccaatacgacgcagcttgctcttgtgagctcggcgagccctg
aaacctgcaaaaatggaaacggcacacactgcccgtcacgcacgatcagttttcacaagg
acacgccgaagtacatcggatgtggcatcctgatcgccttcgtcattttccacatttttt
tgtatttctacctcgaggatcagaaggcgagggagcagaagaagtattttgaagagctca
tcgctgagcagatggcggctaggaagcgagaagaacaagacgaaaagcagcacgaggatg
aggagatgctgtgtcgtttgcgaattggtgtctctaaggaccggaagcgagaagaacaag
acgatcagcagcacgaggatgaggcgccggaagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCACACCAAATGTGCCTGTTTCCGC 85 273 83 Antisense
CGAACACTTCAAACGTGACCGCTCC 356 253 113 Antisense
CAAAAAGTCCTAATGCGACCGCTCC 317 191 152 Antisense
GCTCCTGCCGGTAATTCGACGAAAA 687 295 172 Antisense
AATACGACGCAGCTTGCTCTTGTGA 341 171 223 Antisense
TCACGCACGATCAGTTTTCACAAGG 212 627 298 Antisense
CTTCGTCATTTTCCACATTTTTTTG 203 221 360 Antisense
TGAGGAGATGCTGTGTCGTTTGCGA 53 567 501 Antisense
GTCGTTTGCGAATTGGTGTCTCTAA 372 473 515 Antisense
GGTGTCTCTAAGGACCGGAAGCGAG 295 403 529 Antisense
AGCACGAGGATGAGGCGCCGGAAGC 288 71 572 Antisense
Sequence Source Affymetrix Proprietary Database