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[172286_x_at]

Description W09C3.8 /REP_DB=WormBase Gene ID /WP=CE14758 /TR=P91533 /GB=AAC24416.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 12      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 159
1 2 3 4 range
A 94.5
(3)
A 		70.5
(1.3)
A 		10
(-3)
A 		72.5
(1.4)
A 		85
B 55.6
(3)
A 		8.6
(-3)
A 		16.3
(-2)
A 		49
(2.2)
A 		47
C 25.9
(-3)
A 		75.8
(-0.9)
A 		91.1
(-0.2)
A 		167.5
(3)
A 		142
avr 58.7
(-0.9) 		51.6
(-1.7) 		39.1
(-3) 		96.3
(3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 96.2
(3)
A 		16.1
(-3)
A 		27.9
(-2.1)
A 		59.4
(0.2)
A 		16.8
(-2.9)
A 		25.6
(-2.3)
A 		80
B 7
(-3)
A 		54.8
(0.8)
A 		6.6
(-3)
A 		53
(0.7)
A 		76.7
(2.5)
A 		82.7
(3)
A 		76
C 10.5
(-2.5)
A 		53.7
(3)
A 		11.2
(-2.4)
A 		52.3
(2.8)
A 		47.3
(2.2)
A 		6.9
(-3)
A 		47
avr 37.9
(0.4) 		41.5
(1) 		15.2
(-3) 		54.9
(3) 		46.9
(1.8) 		38.4
(0.5) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 34.4
(3)
A 		15.3
(-0.6)
A 		2.6
(-3)
A 		10.6
(-1.5)
A 		32
B 17.7
(3)
A 		2.1
(-3)
A 		3.8
(-2.3)
A 		10.4
(0.2)
A 		16
C 8.6
(-3)
A 		21.8
(0.4)
A 		31.8
(3)
A 		28.3
(2.1)
A 		23
avr 20.2
(3) 		13.1
(-2.7) 		12.7
(-3) 		16.4
(-0) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 17.7
(3)
A 		5.7
(-2.7)
A 		6.1
(-2.5)
A 		15.1
(1.8)
A 		5.1
(-3)
A 		6.2
(-2.5)
A 		13
B 2.4
(-2.8)
A 		18.2
(0.4)
A 		1.6
(-3)
A 		14
(-0.5)
A 		31.2
(3)
A 		30.8
(2.9)
A 		30
C 3.9
(-2.3)
A 		16.4
(3)
A 		2.8
(-2.8)
A 		10.5
(0.5)
A 		15.3
(2.5)
A 		2.3
(-3)
A 		14
avr 8
(-1) 		13.4
(1.3) 		3.5
(-3) 		13.2
(1.2) 		17.2
(3) 		13.1
(1.2) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172286_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2137
Sequence Type Exemplar sequence
Representative Public ID W09C3.8 NCBI
Target Description W09C3.8 /REP_DB=WormBase Gene ID /WP=CE14758 /TR=P91533 /GB=AAC24416.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059031(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059031 NCBI Caenorhabditis elegans W09C3.8 (W09C3.8) mRNA, complete cds. 11/11 None
GENEFINDER00000028191 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4715767:4717625:-1 11/11 None
SNAP00000028189 ENSEMBL cdna:SNAP chromosome:CEL140:I:4716060:4717442:-1 11/11 None
W09C3.8 ENSEMBL cdna:known chromosome:CEL140:I:4716060:4717625:-1 gene:W09C3.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_075922 6/11 Cross Hyb Matching Probes A 
NM_067753 3/11 Cross Hyb Matching Probes A 
NM_066214 2/11 Cross Hyb Matching Probes A 
NM_068720 3/11 Cross Hyb Matching Probes A 
SNAP00000043608 6/11 Cross Hyb Matching Probes None
GENEFINDER00000043621 6/11 Cross Hyb Matching Probes None
SNAP00000032856 2/11 Cross Hyb Matching Probes None
GENEFINDER00000032865 2/11 Cross Hyb Matching Probes None
SNAP00000003803 3/11 Cross Hyb Matching Probes None
GENEFINDER00000003821 3/11 Cross Hyb Matching Probes None
SNAP00000007753 3/11 Cross Hyb Matching Probes None
GENEFINDER00000007760 3/11 Cross Hyb Matching Probes None
SNAP00000032798 2/11 Cross Hyb Matching Probes None
SNAP00000021928 6/11 Cross Hyb Matching Probes None
GENEFINDER00000021982 6/11 Cross Hyb Matching Probes None
F02E9.8 6/11 Cross Hyb Matching Probes A 
F56C9.2 2/11 Cross Hyb Matching Probes A 
Y76B12C.5 3/11 Cross Hyb Matching Probes A 
C34D4.5 3/11 Cross Hyb Matching Probes A 
Y75D11A.4 6/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8441587-8442126(+) 47.42 47.42
chrIII:7328205-7328744(+) 46.61 46.61
chrIV:7146676-7147215(+) 46.17 46.17
chrX:1762698-1763237(-) 46.97 46.97
chrI:4716059-4717625(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W09C3.8
Entrez Gene 189312 Entrez gene
WormBase CE39115 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491432 W09C3.8 [Caenorhabditis elegans] 0.0
blast ABA03112 Hypothetical protein W09C3.8 [Caenorhabditis elegans] 0.0
blast ABA03112 Hypothetical protein W09C3.8 [Caenorhabditis elegans] 1.0E-173
blast T20517 hypothetical protein F02E9.8 - Caenorhabditis elegans 1.0E-101
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491432.1 1 47-69
W09C3.8 1 47-69
GENEFINDER00000028191 1 47-69
Sequence
Target Sequence 
>C. ELEGANS:172286_X_AT
attgcaatcaagtttcgttgtttcaaaggattggaattctgcttttgagacatttgagtg
ttccactttaagagcaggttggggtgctctggttggaatcaaagaagtcttgagaatcat
gccaaacaaggaaagaatcatcctcttcaagcaaaatgtgctaccagccctcctgtatgc
tagtgaaacttggacttgtaatgctggatccacgttgagactcaaaaaaactgtcaccgg
tctcatcgacgctgcagaaattcgaggctggaacttcaacttggaacgttacctccttgc
aaaacaatcaagatttgcaggacacattctacggagagacccaaaccgatggacaaaaat
ctgcacggaatgggacccgagccacaacaaaaattggaaacgtgccgttggaggacagaa
gaagagatgggcaaaggacatcgacgaagaatacgcaaaattccaccacaattccgccat
gtcgggacaagtcgtcgttgggagaagaagactaggaatgctcactccgaaggctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGCAATCAAGTTTCGTTGTTTCA 183 5 528 Antisense
GGAATTCTGCTTTTGAGACATTTGA 682 533 560 Antisense
GAGTGTTCCACTTTAAGAGCAGGTT 451 401 583 Antisense
CCAGCCCTCCTGTATGCTAGTGAAA 349 273 691 Antisense
ATGCTGGATCCACGTTGAGACTCAA 561 41 728 Antisense
CAAAAAAACTGTCACCGGTCTCATC 130 189 750 Antisense
GGTCTCATCGACGCTGCAGAAATTC 400 501 766 Antisense
CAACTTGGAACGTTACCTCCTTGCA 142 187 804 Antisense
GAATGGGACCCGAGCCACAACAAAA 479 331 895 Antisense
CCACAATTCCGCCATGTCGGGACAA 36 275 993 Antisense
CTAGGAATGCTCACTCCGAAGGCTC 664 211 1039 Antisense
Sequence Source Affymetrix Proprietary Database