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[172285_x_at]

Description W02B3.6 /REP_DB=WormBase Gene ID /WP=CE02078 /TR=Q09640 /GB=AAA64325.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 44      6grp_high1_10_10 > 43      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 32      6grp_total > 11      4grp_total > 03      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9099
1 2 3 4 range
A 1022.7
(-2.6)
P 		460.2
(-3)
P 		439.7
(-3)
P 		8941.5
(3)
P 		8502
B 2042.7
(-0.1)
P 		556.4
(-2.9)
P 		524.8
(-3)
P 		3706.9
(3)
P 		3182
C 1738.2
(-2.1)
P 		365.5
(-3)
P 		377.2
(-3)
P 		9464.8
(3)
P 		9099
avr 1601.2
(-2) 		460.7
(-3) 		447.2
(-3) 		7371.1
(3) 		6924

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3843
1 2 3 4 5 6 range
A 760.3
(-2)
P 		500.6
(-2.4)
P 		3584.7
(3)
P 		210.3
(-2.9)
P 		1132.4
(-1.3)
P 		169.6
(-3)
P 		3415
B 1006.8
(0.5)
P 		1430.2
(3)
P 		1094.9
(1)
P 		400
(-3)
P 		602.7
(-1.8)
P 		411.1
(-2.9)
P 		1030
C 389
(-2.6)
P 		3993.2
(3)
P 		253.7
(-2.8)
P 		241.3
(-2.9)
P 		150.7
(-3)
P 		421.4
(-2.6)
P 		3843
avr 718.7
(-1.5) 		1974.7
(3) 		1644.4
(1.8) 		283.9
(-3) 		628.6
(-1.8) 		334
(-2.8) 		1691
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1496
1 2 3 4 range
A 372.4
(-1.6)
P 		99.9
(-3)
P 		114.9
(-2.9)
P 		1308.9
(3)
P 		1209
B 651.4
(1.8)
P 		137.4
(-2.9)
P 		121.6
(-3)
P 		789.9
(3)
P 		668
C 575.4
(-1.1)
P 		105.1
(-3)
P 		131.5
(-2.9)
P 		1595.9
(3)
P 		1491
avr 533.1
(-0.8) 		114.1
(-3) 		122.7
(-3) 		1231.6
(3) 		1118

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1177
1 2 3 4 5 6 range
A 140.2
(-2.2)
P 		178
(-1.9)
P 		780.7
(3)
P 		53.3
(-2.9)
P 		341.7
(-0.6)
P 		41.3
(-3)
P 		739
B 350.3
(1)
P 		476.1
(3)
P 		265.9
(-0.4)
P 		105.9
(-3)
P 		244.9
(-0.7)
P 		153.3
(-2.2)
P 		370
C 144.2
(-2.5)
P 		1218.4
(3)
P 		64.6
(-2.9)
P 		48.5
(-3)
P 		48.8
(-3)
P 		141.1
(-2.5)
P 		1170
avr 211.6
(-1.5) 		624.2
(3) 		370.4
(0.3) 		69.2
(-3) 		211.8
(-1.5) 		111.9
(-2.5) 		555
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172285_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8353
Sequence Type Exemplar sequence
Representative Public ID W02B3.6 NCBI
Target Description W02B3.6 /REP_DB=WormBase Gene ID /WP=CE02078 /TR=Q09640 /GB=AAA64325.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064837(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064837 NCBI Caenorhabditis elegans W02B3.6 (W02B3.6) mRNA, complete cds. 11/11 None
SNAP00000011594 ENSEMBL cdna:SNAP chromosome:CEL140:III:690343:690741:-1 11/11 None
GENEFINDER00000011601 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:690343:691614:-1 11/11 None
W02B3.6 ENSEMBL cdna:known chromosome:CEL140:III:690343:690741:-1 gene:W02B3.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000002760 1/11 Cross Hyb Matching Probes None
GENEFINDER00000029147 1/11 Cross Hyb Matching Probes None
SNAP00000003365 5/11 Cross Hyb Matching Probes None
GENEFINDER00000003374 5/11 Cross Hyb Matching Probes None
SNAP00000021879 2/11 Cross Hyb Matching Probes None
SNAP00000029285 4/11 Cross Hyb Matching Probes None
SNAP00000029286 2/11 Cross Hyb Matching Probes None
GENEFINDER00000029298 2/11 Cross Hyb Matching Probes None
SNAP00000042947 2/11 Cross Hyb Matching Probes None
GENEFINDER00000042954 2/11 Cross Hyb Matching Probes None
SNAP00000001448 2/11 Cross Hyb Matching Probes None
GENEFINDER00000001469 4/11 Cross Hyb Matching Probes None
SNAP00000001610 1/11 Cross Hyb Matching Probes None
GENEFINDER00000001634 1/11 Cross Hyb Matching Probes None
SNAP00000004114 2/11 Cross Hyb Matching Probes None
GENEFINDER00000004194 2/11 Cross Hyb Matching Probes None
GENEFINDER00000013167 1/11 Cross Hyb Matching Probes None
SNAP00000019399 1/11 Cross Hyb Matching Probes None
GENEFINDER00000019412 1/11 Cross Hyb Matching Probes None
SNAP00000026162 1/11 Cross Hyb Matching Probes None
GENEFINDER00000026170 1/11 Cross Hyb Matching Probes None
GENEFINDER00000027324 1/11 Cross Hyb Matching Probes None
SNAP00000028756 3/11 Cross Hyb Matching Probes None
GENEFINDER00000028763 3/11 Cross Hyb Matching Probes None
GENEFINDER00000026707 1/11 Cross Hyb Matching Probes None
SNAP00000006574 3/11 Cross Hyb Matching Probes None
GENEFINDER00000017316 1/11 Cross Hyb Matching Probes None
SNAP00000032586 1/11 Cross Hyb Matching Probes None
GENEFINDER00000032588 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Ensembl W02B3.6
Entrez Gene 175224 Entrez gene
SwissProt Q09640 EMBL-EBI
WormBase CE02078 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA64326 Hypothetical protein W02B3.7 [Caenorhabditis elegans] ref|NP_497239.1| W02B3.7 [Caenorhabditis elegans] sp|Q09343|YR27_CAEEL Hypothetical protein W02B3.7 in chromosome III 1.0E-68
blast CAE69206 Hypothetical protein CBG15246 [Caenorhabditis briggsae] 3.0E-30
blast AAA64323 Hypothetical protein W02B3.4 [Caenorhabditis elegans] ref|NP_497236.2| W02B3.4 [Caenorhabditis elegans] sp|Q09341|YR24_CAEEL Hypothetical protein W02B3.4 in chromosome III 2.0E-19
blast AAA64325 Hypothetical protein W02B3.6 [Caenorhabditis elegans] ref|NP_497238.1| W02B3.6 [Caenorhabditis elegans] 4.0E-19
Protein Domains
Database ID Description E-Value
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 4.0E-5
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 2.6E-7
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 9.9E-10
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 9.8E-11
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 3.1E-6
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 2.6E-7
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 9.9E-10
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 9.8E-11
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497238.1 3 13-35,62-84,96-118
W02B3.6 3 13-35,62-84,96-118
SNAP00000011594 3 13-35,62-84,96-118
GENEFINDER00000011601 3 166-188,201-223,236-258
Sequence
Target Sequence 
>C. ELEGANS:172285_X_AT
catcacgatgggtctcaccacgatgggtctcatcacgatgggtctcatcacgatgggact
caccacgaagggtctcaccccgctaggtctcaccacgaagggtctcatcacgaagggtct
catcacgaagggtctcatcacgatgggtctcatcacgatgggactcaccacaaagggtct
caccccgctaggtctcaccacgaagggtctcgccacgatgggtctcaacacgataggtct
cgccacgatgggtctcatcacgattggtctcacaacggagagtctcgccacgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATCACGATGGGTCTCACCACGATG 353 213 66 Antisense
GATGGGTCTCATCACGATGGGTCTC 212 409 87 Antisense
ATGGGACTCACCACGAAGGGTCTCA 604 1 118 Antisense
ACCACGAAGGGTCTCATCACGAAGG 605 85 157 Antisense
ACGAAGGGTCTCATCACGAAGGGTC 518 91 175 Antisense
GAAGGGTCTCATCACGATGGGTCTC 433 335 192 Antisense
GGGTCTCATCACGATGGGACTCACC 637 497 210 Antisense
TGGGACTCACCACAAAGGGTCTCAC 572 553 224 Antisense
GATGGGTCTCAACACGATAGGTCTC 209 409 282 Antisense
CTCATCACGATTGGTCTCACAACGG 430 229 319 Antisense
TCACAACGGAGAGTCTCGCCACGAT 11 629 335 Antisense
Sequence Source Affymetrix Proprietary Database