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[172284_x_at]

Description T27E4.4 /REP_DB=WormBase Gene ID /WP=CE14253 /TR=Q23052 /GB=AAB04835.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 67      6grp_high1_10_10 > 75      4grp_highest_8_8 > 07      4grp_high_8_8 > 21      6grp_highest_nonorm > 94      6grp_total > 66      4grp_total > 18      6grp_highest_sub > In      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 577
1 2 3 4 range
A 791
(-2.8)
P 		1347.1
(3)
P 		773
(-3)
P 		1300.9
(2.5)
P 		574
B 926
(-1.8)
P 		874.8
(-3)
P 		952.5
(-1.1)
P 		1122.5
(3)
P 		248
C 937.9
(-2.1)
P 		869.8
(-3)
P 		961.3
(-1.9)
P 		1350.1
(3)
P 		480
avr 885
(-3) 		1030.6
(-0.7) 		895.6
(-2.8) 		1257.8
(3) 		373

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 725
1 2 3 4 5 6 range
A 322.3
(-3)
P 		393.6
(-2.2)
P 		854.6
(3)
P 		471.9
(-1.3)
P 		366.9
(-2.5)
P 		662.8
(0.8)
P 		532
B 327.1
(-3)
P 		369.6
(-2.6)
P 		681.6
(0.6)
P 		363.5
(-2.6)
P 		516.4
(-1.1)
P 		919.5
(3)
P 		592
C 412.8
(-2.9)
P 		409.2
(-2.9)
P 		401.4
(-3)
P 		487.5
(-2.2)
P 		491.3
(-2.2)
P 		1047.6
(3)
P 		646
avr 354.1
(-3) 		390.8
(-2.6) 		645.9
(0.4) 		441
(-2) 		458.2
(-1.8) 		876.6
(3) 		523
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 145
1 2 3 4 range
A 288
(2.7)
P 		292.4
(3)
P 		202.1
(-2.3)
P 		190.4
(-3)
P 		102
B 295.3
(3)
P 		216.1
(-3)
P 		220.7
(-2.7)
P 		239.2
(-1.3)
P 		79
C 310.5
(1.6)
P 		250.1
(-1.7)
P 		335
(3)
P 		227.7
(-3)
P 		107
avr 297.9
(3) 		252.9
(-0.4) 		252.6
(-0.4) 		219.1
(-3) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 291
1 2 3 4 5 6 range
A 59.4
(-3)
P 		140
(0.8)
P 		186.1
(3)
P 		119.7
(-0.1)
P 		110.7
(-0.6)
P 		161.4
(1.8)
P 		127
B 113.8
(-2.6)
P 		123
(-2.4)
P 		165.5
(-1.3)
P 		96.3
(-3)
P 		209.8
(-0.2)
P 		342.9
(3)
P 		247
C 153
(-1.7)
P 		124.9
(-2.4)
P 		102.2
(-2.9)
P 		98
(-3)
P 		159
(-1.6)
P 		350.7
(3)
P 		253
avr 108.7
(-2.9) 		129.3
(-2.2) 		151.3
(-1.4) 		104.7
(-3) 		159.8
(-1.2) 		285
(3) 		180
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172284_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11472
Sequence Type Exemplar sequence
Representative Public ID T27E4.4 NCBI
Target Description T27E4.4 /REP_DB=WormBase Gene ID /WP=CE14253 /TR=Q23052 /GB=AAB04835.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072949(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072949 NCBI Caenorhabditis elegans T27E4.4 (T27E4.4) mRNA, complete cds. 11/11 None
SNAP00000044629 ENSEMBL cdna:SNAP chromosome:CEL140:V:9070595:9070914:1 11/11 None
GENEFINDER00000044643 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9070595:9070914:1 11/11 None
T27E4.4.1 ENSEMBL cdna:known chromosome:CEL140:V:9070563:9071404:1 gene:T27E4.4 11/11 A 
T27E4.4.2 ENSEMBL cdna:known chromosome:CEL140:V:9070565:9070977:1 gene:T27E4.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_073233 1/11 Cross Hyb Matching Probes A 
NM_001028483 1/11 Cross Hyb Matching Probes None
NM_073528 1/11 Cross Hyb Matching Probes A 
NM_001028481 1/11 Cross Hyb Matching Probes None
NM_077334 1/11 Cross Hyb Matching Probes A 
NM_001028479 1/11 Cross Hyb Matching Probes None
NM_071707 1/11 Cross Hyb Matching Probes A 
SNAP00000015622 1/11 Cross Hyb Matching Probes None
SNAP00000020994 1/11 Cross Hyb Matching Probes None
SNAP00000020998 1/11 Cross Hyb Matching Probes None
SNAP00000020999 1/11 Cross Hyb Matching Probes None
SNAP00000021004 1/11 Cross Hyb Matching Probes None
GENEFINDER00000021012 1/11 Cross Hyb Matching Probes None
GENEFINDER00000021013 1/11 Cross Hyb Matching Probes None
GENEFINDER00000021021 1/11 Cross Hyb Matching Probes None
GENEFINDER00000021022 1/11 Cross Hyb Matching Probes None
SNAP00000025860 1/11 Cross Hyb Matching Probes None
GENEFINDER00000025869 1/11 Cross Hyb Matching Probes None
SNAP00000043090 1/11 Cross Hyb Matching Probes None
GENEFINDER00000043093 1/11 Cross Hyb Matching Probes None
B0213.5 1/11 Cross Hyb Matching Probes A 
C12D8.14 1/11 Cross Hyb Matching Probes None
C12D8.16 1/11 Cross Hyb Matching Probes None
C12D8.6 1/11 Cross Hyb Matching Probes A 
F38B7.3 1/11 Cross Hyb Matching Probes A 
R07E3.2 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9070595-9070915(+) 72.59 100.0
Public Domain and Genome References
Gene Title
Ensembl T27E4.4
Entrez Gene 179283 Entrez gene
SwissProt Q23052 EMBL-EBI
WormBase CE14253 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB04835 Hypothetical protein T27E4.4 [Caenorhabditis elegans] ref|NP_505350.1| T27E4.4 [Caenorhabditis elegans] 2.0E-19
blast CAE72090 Hypothetical protein CBG19179 [Caenorhabditis briggsae] 3.0E-15
Sequence
Target Sequence 
>C. ELEGANS:172284_X_AT
ggactcttcttgacgttgtcgattcgaaaggagttccagcaaagcgtgtaaagagacaat
attatggaggatatggatacggtggatatggttatggtggctgtaactgtcccacttatg
ccccatgcacacatggtccaggtggatattatggttatggaggatatggcggatatggtg
gctatggaggctatggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACTCTTCTTGACGTTGTCGATTC 339 525 56 Antisense
TGTCGATTCGAAAGGAGTTCCAGCA 41 559 72 Antisense
GGAGTTCCAGCAAAGCGTGTAAAGA 616 517 85 Antisense
ATGGAGGATATGGATACGGTGGATA 51 53 119 Antisense
CGGTGGATATGGTTATGGTGGCTGT 172 243 135 Antisense
TGGTGGCTGTAACTGTCCCACTTAT 467 553 150 Antisense
CACTTATGCCCCATGCACACATGGT 658 195 168 Antisense
CATGCACACATGGTCCAGGTGGATA 557 209 179 Antisense
GGTCCAGGTGGATATTATGGTTATG 660 501 190 Antisense
GGAGGATATGGCGGATATGGTGGCT 204 517 214 Antisense
ATATGGTGGCTATGGAGGCTATGGT 42 19 228 Antisense
Sequence Source Affymetrix Proprietary Database