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[172283_x_at]

Description R04E5.7 /REP_DB=WormBase Gene ID /WP=CE04799 /TR=Q9GYL5 /GB=AAG00009.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 17      4grp_total > 12      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 70.4
(1)
P 		34.5
(-2.7)
A 		31.4
(-3)
A 		90.4
(3)
A 		59
B 50.9
(-0.8)
A 		21.3
(-3)
A 		22.4
(-2.9)
A 		103.2
(3)
P 		82
C 37.3
(-0.2)
A 		54.1
(1.3)
A 		5
(-3)
A 		74.3
(3)
P 		69
avr 52.9
(-0.1) 		36.6
(-1.5) 		19.6
(-3) 		89.3
(3) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 64.1
(3)
A 		44
(-0.6)
A 		58.7
(2)
A 		40
(-1.4)
A 		30.9
(-3)
A 		38.5
(-1.6)
A 		33
B 55.8
(3)
A 		18.6
(-2)
A 		35.3
(0.3)
A 		10.9
(-3)
A 		32.5
(-0.1)
A 		15.5
(-2.4)
A 		45
C 40.3
(3)
A 		37.9
(2.5)
A 		23.8
(-0.4)
A 		10.9
(-3)
A 		37.4
(2.4)
A 		40.2
(3)
P 		29
avr 53.4
(3) 		33.5
(-0.6) 		39.3
(0.4) 		20.6
(-3) 		33.6
(-0.6) 		31.4
(-1) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 25.6
(3)
P 		7.5
(-3)
A 		8.2
(-2.8)
A 		13.2
(-1.1)
A 		18
B 16.2
(0.9)
A 		5.3
(-3)
A 		5.2
(-3)
A 		22
(3)
P 		17
C 12.4
(1.7)
A 		15.5
(3)
A 		1.7
(-3)
A 		12.5
(1.7)
P 		14
avr 18.1
(3) 		9.4
(-1) 		5
(-3) 		15.9
(2) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 11.8
(-0.6)
A 		15.6
(3)
A 		12.8
(0.3)
A 		10.1
(-2.2)
A 		9.3
(-3)
A 		9.4
(-2.9)
A 		6
B 19.4
(3)
A 		6.2
(-1.8)
A 		8.6
(-0.9)
A 		2.9
(-3)
A 		13.2
(0.7)
A 		5.8
(-1.9)
A 		17
C 14.9
(3)
A 		11.6
(1.4)
A 		6
(-1.2)
A 		2.2
(-3)
A 		12.1
(1.7)
A 		13.5
(2.3)
P 		13
avr 15.4
(3) 		11.1
(0.5) 		9.1
(-0.7) 		5.1
(-3) 		11.5
(0.7) 		9.6
(-0.4) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172283_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16144
Sequence Type Exemplar sequence
Representative Public ID R04E5.7 NCBI
Target Description R04E5.7 /REP_DB=WormBase Gene ID /WP=CE04799 /TR=Q9GYL5 /GB=AAG00009.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077089(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077089 NCBI Caenorhabditis elegans R04E5.7 (R04E5.7) mRNA, complete cds. 9/11 None
R04E5.7 ENSEMBL cdna:known chromosome:CEL140:X:8796482:8798149:-1 gene:R04E5.7 9/11 B 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000036364 5/11 Cross Hyb Matching Probes None
GENEFINDER00000036373 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8796480-8796603(-) 47.13 47.13
Public Domain and Genome References
Gene Title
Ensembl R04E5.7
Entrez Gene 181126 Entrez gene
SwissProt Q9GYL5 EMBL-EBI
WormBase CE35748 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG00009 Hypothetical protein R04E5.7 [Caenorhabditis elegans] ref|NP_509490.2| R04E5.7 [Caenorhabditis elegans] 2.0E-53
blast CAE69365 Hypothetical protein CBG15460 [Caenorhabditis briggsae] 2.0E-16
Sequence
Target Sequence 
>C. ELEGANS:172283_X_AT
gaatttgtccataaatgttgatgtacatagttatactgaaaaaaaaatgaatcaaatcaa
tgtattcttgagcaacagattcatatgtcaaaaaagattttacaagtttctgtatcaaaa
tgatagtccattcgacaacaacgaacgtcttgaccttgacccaaaaacatgctcacagtt
ctcgctaccagaagttgcacaaaatgagggagataccttcaatgtacag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTTGTCCATAAATGTTGATGTA 274 325 15 Antisense
GTTGATGTACATAGTTATACTGAAA 234 439 31 Antisense
AAATCAATGTATTCTTGAGCAACAG 173 117 68 Antisense
TGAGCAACAGATTCATATGTCAAAA 156 557 83 Antisense
ATGATAGTCCATTCGACAACAACGA 165 47 134 Antisense
GACAACAACGAACGTCTTGACCTTG 23 367 148 Antisense
CGTCTTGACCTTGACCCAAAAACAT 260 245 160 Antisense
GACCCAAAAACATGCTCACAGTTCT 533 381 172 Antisense
CTCACAGTTCTCGCTACCAGAAGTT 210 227 186 Antisense
CTCGCTACCAGAAGTTGCACAAAAT 483 233 195 Antisense
TGAGGGAGATACCTTCAATGTACAG 322 567 219 Antisense
Sequence Source Affymetrix Proprietary Database