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[172282_x_at]

Description T05H4.8 /REP_DB=WormBase Gene ID /WP=CE27443 /TR=O16513 /GB=AAB66014.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 01      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 296
1 2 3 4 range
A 7.5
(-3)
A 		48.9
(-2.1)
A 		34.8
(-2.4)
A 		273.7
(3)
A 		266
B 84.8
(3)
A 		15.9
(-3)
A 		56.7
(0.6)
A 		81.8
(2.7)
A 		69
C 22.2
(-2.9)
A 		17.4
(-3)
A 		41
(-2.5)
A 		303.3
(3)
A 		286
avr 38.2
(-2.7) 		27.4
(-3) 		44.2
(-2.5) 		219.6
(3) 		192

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 183
1 2 3 4 5 6 range
A 18.9
(-2.3)
A 		60.8
(-0.3)
A 		130.9
(3)
A 		4.3
(-3)
A 		9.8
(-2.7)
A 		13.4
(-2.6)
A 		127
B 39.4
(-1.4)
A 		105.4
(3)
A 		15.2
(-3)
A 		19
(-2.7)
A 		44.3
(-1.1)
A 		37
(-1.5)
A 		90
C 41.1
(-1.8)
A 		187.1
(3)
A 		29.4
(-2.2)
A 		3.7
(-3)
A 		6.4
(-2.9)
A 		28.4
(-2.2)
A 		183
avr 33.1
(-1.7) 		117.8
(3) 		58.5
(-0.3) 		9
(-3) 		20.2
(-2.4) 		26.3
(-2) 		109
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 2.7
(-3)
A 		10.6
(-1.7)
A 		9.1
(-2)
A 		40.1
(3)
A 		37
B 27
(3)
A 		3.9
(-3)
A 		13.1
(-0.6)
A 		17.4
(0.5)
A 		23
C 7.3
(-2.7)
A 		5
(-3)
A 		14.3
(-1.8)
A 		51.1
(3)
A 		46
avr 12.3
(-1.8) 		6.5
(-3) 		12.2
(-1.8) 		36.2
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 3.5
(-2.5)
A 		21.6
(1.5)
A 		28.5
(3)
A 		1.1
(-3)
A 		3
(-2.6)
A 		3.3
(-2.5)
A 		27
B 13.7
(-1.1)
A 		35.1
(3)
A 		3.7
(-3)
A 		5
(-2.8)
A 		18
(-0.3)
A 		13.8
(-1.1)
A 		31
C 15.2
(-1.5)
A 		57.1
(3)
A 		7.5
(-2.3)
A 		0.7
(-3)
A 		2.1
(-2.9)
A 		9.5
(-2.1)
A 		56
avr 10.8
(-1.6) 		37.9
(3) 		13.2
(-1.2) 		2.3
(-3) 		7.7
(-2.1) 		8.9
(-1.9) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172282_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12048
Sequence Type Exemplar sequence
Representative Public ID T05H4.8 NCBI
Target Description T05H4.8 /REP_DB=WormBase Gene ID /WP=CE27443 /TR=O16513 /GB=AAB66014.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072228
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T05H4.8 ENSEMBL cdna:pseudogene chromosome:CEL140:V:6420342:6420903:-1 gene:T05H4.8 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_072228 1/11 Cross Hyb Matching Probes A 
NM_070095 2/11 Cross Hyb Matching Probes A 
GENEFINDER00000013044 1/11 Cross Hyb Matching Probes None
SNAP00000000181 1/11 Cross Hyb Matching Probes None
GENEFINDER00000000222 1/11 Cross Hyb Matching Probes None
GENEFINDER00000011106 4/11 Cross Hyb Matching Probes None
GENEFINDER00000011585 3/11 Cross Hyb Matching Probes None
GENEFINDER00000044703 1/11 Cross Hyb Matching Probes None
GENEFINDER00000040323 1/11 Cross Hyb Matching Probes None
SNAP00000020492 2/11 Cross Hyb Matching Probes None
SNAP00000000511 3/11 Cross Hyb Matching Probes None
F49E11.3 2/11 Cross Hyb Matching Probes A 
T05H4.10 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6420233-6420903(-) 42.45 100.0
Public Domain and Genome References
Ensembl T05H4.8
Sequence
Target Sequence 
>C. ELEGANS:172282_X_AT
tgtgacactctacaatatttcatacatttttgaaaaaattcaaaaaaaatttttggatca
aattttctcatggggtaattgtggttcaatcaaaaagcaaaaaagtaataggcgaacgcg
ttcaccactcgaccaccgaagcgatgatttcgcccttccaccattgcatactacattttc
agatgaaaatttccagactcacagaggtcttccgccgaaacaaattacagattctgaaag
cctaagatgccagctatcgcataacacgtttacttttacccgatcgcaccatcttgtcaa
ttctggaaaacatctcaaaagaccctcaattcgccgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTGACACTCTACAATATTTCATAC 171 555 30 Antisense
TTGGATCAAATTTTCTCATGGGGTA 161 709 82 Antisense
TTCTCATGGGGTAATTGTGGTTCAA 24 693 94 Antisense
TAATAGGCGAACGCGTTCACCACTC 16 633 135 Antisense
ACCGAAGCGATGATTTCGCCCTTCC 601 89 164 Antisense
CTTCCACCATTGCATACTACATTTT 395 219 184 Antisense
CAGAGGTCTTCCGCCGAAACAAATT 278 205 231 Antisense
GAAAGCCTAAGATGCCAGCTATCGC 128 359 265 Antisense
CCAGCTATCGCATAACACGTTTACT 336 273 279 Antisense
GATCGCACCATCTTGTCAATTCTGG 567 417 311 Antisense
TCTCAAAAGACCCTCAATTCGCCGG 292 611 342 Antisense
Sequence Source Affymetrix Proprietary Database