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[172280_x_at]

Description Y19D2B.1 /REP_DB=WormBase Gene ID /WP=CE19055 /TR=Q9XXH2 /GB=CAA19475.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 14      6grp_high1_10_10 > 41      4grp_highest_8_8 > 10      4grp_high_8_8 > 54      6grp_highest_nonorm > 24      6grp_total > 41      4grp_total > 57      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4548
1 2 3 4 range
A 2815.9
(-2.2)
P 		5113
(1)
P 		6504.2
(3)
P 		2247
(-3)
P 		4257
B 2883.3
(-2.3)
P 		5143.4
(2.7)
P 		5272.3
(3)
P 		2585.9
(-3)
P 		2686
C 2743.8
(-1.8)
P 		4625.2
(0.9)
P 		6042.2
(3)
P 		1956.3
(-3)
P 		4086
avr 2814.3
(-2.1) 		4960.5
(1.4) 		5939.6
(3) 		2263.1
(-3) 		3677

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1723
1 2 3 4 5 6 range
A 3300.1
(0.6)
P 		3328.8
(0.7)
P 		3954
(3)
P 		3523.9
(1.4)
P 		2443.7
(-2.5)
P 		2298.7
(-3)
P 		1655
B 3269
(0.2)
P 		3480
(1.2)
P 		3870.1
(3)
P 		3450.5
(1.1)
P 		2796.2
(-1.9)
P 		2563.7
(-3)
P 		1306
C 3086.4
(-1.9)
P 		3381.5
(-0.4)
P 		4021.9
(3)
P 		3202
(-1.3)
P 		2884.5
(-3)
P 		2971.7
(-2.5)
P 		1137
avr 3218.5
(-0.3) 		3396.8
(0.5) 		3948.7
(3) 		3392.1
(0.5) 		2708.1
(-2.6) 		2611.4
(-3) 		1337
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1777
1 2 3 4 range
A 1025.3
(0)
P 		1109.9
(0.4)
P 		1700.3
(3)
P 		328.9
(-3)
P 		1371
B 919.5
(0.1)
P 		1270.3
(3)
P 		1221.7
(2.6)
P 		551.1
(-3)
P 		719
C 908.3
(-1)
P 		1329.8
(0.4)
P 		2105.9
(3)
P 		329.9
(-3)
P 		1776
avr 951
(-0.4) 		1236.7
(0.9) 		1676
(3) 		403.3
(-3) 		1273

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 624
1 2 3 4 5 6 range
A 608.4
(-2.5)
P 		1183.9
(3)
P 		861.1
(-0.1)
P 		893.7
(0.2)
P 		737.4
(-1.3)
P 		559.7
(-3)
P 		624
B 1137.4
(2.5)
P 		1158.3
(3)
P 		939.8
(-2.4)
P 		913.9
(-3)
P 		1136.1
(2.5)
P 		956
(-2)
P 		244
C 1144
(3)
P 		1031.8
(1.7)
P 		1023.7
(1.6)
P 		643.9
(-3)
P 		933.4
(0.5)
P 		994.8
(1.2)
P 		500
avr 963.3
(-0.1) 		1124.7
(3) 		941.5
(-0.6) 		817.2
(-3) 		935.6
(-0.7) 		836.8
(-2.6) 		308
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172280_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3909
Sequence Type Exemplar sequence
Representative Public ID Y19D2B.1 NCBI
Target Description Y19D2B.1 /REP_DB=WormBase Gene ID /WP=CE19055 /TR=Q9XXH2 /GB=CAA19475.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063951(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063951 NCBI Caenorhabditis elegans Y19D2B.1 (Y19D2B.1) mRNA, complete cds. 11/11 None
SNAP00000037129 ENSEMBL cdna:SNAP chromosome:CEL140:II:10922583:10922885:-1 11/11 None
Y19D2B.1 ENSEMBL cdna:known chromosome:CEL140:II:10922583:10922885:-1 gene:Y19D2B.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_063950 7/11 Cross Hyb Matching Probes A 
SNAP00000037128 7/11 Cross Hyb Matching Probes None
GENEFINDER00000037130 8/11 Cross Hyb Matching Probes None
GENEFINDER00000037131 7/11 Cross Hyb Matching Probes None
F44F4.11 7/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10922579-10922882(-) 94.19 100.0
Public Domain and Genome References
Gene Title
Ensembl Y19D2B.1
Entrez Gene 189479 Entrez gene
SwissProt Q9XXH2 EMBL-EBI
WormBase CE19055 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7018 microtubule-based movement inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5874 microtubule inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA19475 Hypothetical protein Y19D2B.1 [Caenorhabditis elegans] ref|NP_496352.1| Y19D2B.1 [Caenorhabditis elegans] 2.0E-44
blast CAA85463 Hypothetical protein F44F4.11 [Caenorhabditis elegans] emb|CAA19476.1| Hypothetical protein F44F4.11 [Caenorhabditis elegans] ref|NP_496351.1| TuBulin, Alpha family member (tba-4) [Caenorhabditis elegans] 6.0E-38
blast CAB16856 Hypothetical protein C47B2.3 [Caenorhabditis elegans] ref|NP_001021050.1| C47B2.3 [Caenorhabditis elegans] dbj|BAA03610.1| alpha-2 tubulin [Caenorhabditis elegans] sp|P34690|TBA2_CAEEL Tubulin alpha-2 chain 1.0E-36
Sequence
Target Sequence 
>C. ELEGANS:172280_X_AT
ggtcagtttcattccatttcataatgtgtgcatgctctccgacactacggctatcgccga
ggcctggtcccgcctggactacaagtttgacttgatgtacgccaagcgcgcctttgttca
ctggtacgtcggagaaggaatggaagagggagagttcactgaggctcgtgaagacttggc
agctctcgagaaggactacgaagaggtcggagctgattccaacgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTCAGTTTCATTCCATTTCATAAT 702 503 15 Antisense
CATTTCATAATGTGTGCATGCTCTC 495 215 29 Antisense
ATAATGTGTGCATGCTCTCCGACAC 684 25 35 Antisense
CTCCGACACTACGGCTATCGCCGAG 32 235 51 Antisense
GTCCCGCCTGGACTACAAGTTTGAC 685 473 81 Antisense
TTGACTTGATGTACGCCAAGCGCGC 707 703 101 Antisense
CTTTGTTCACTGGTACGTCGGAGAA 369 223 126 Antisense
GAGGGAGAGTTCACTGAGGCTCGTG 422 401 160 Antisense
GGCTCGTGAAGACTTGGCAGCTCTC 663 539 177 Antisense
GGCAGCTCTCGAGAAGGACTACGAA 683 535 192 Antisense
AGAGGTCGGAGCTGATTCCAACGAG 53 59 216 Antisense
Sequence Source Affymetrix Proprietary Database