[Home] | [Total List]

[172279_x_at]

Description Y51H4A.6 /REP_DB=WormBase Gene ID /WP=CE25370 /TR=Q9U264 /GB=CAB63381.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 21      4grp_total > 27      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 4.8
(-3)
A 		24
(3)
A 		4.8
(-3)
A 		12.1
(-0.7)
A 		19
B 4.1
(1.2)
A 		2.7
(-3)
A 		4.7
(3)
A 		3.1
(-1.8)
A 		2
C 6.2
(-2.4)
A 		13.8
(-1.3)
A 		2.2
(-3)
A 		44.3
(3)
A 		42
avr 5
(-2.6) 		13.5
(0.6) 		3.9
(-3) 		19.8
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 7.2
(3)
A 		2.2
(-3)
A 		6
(1.6)
A 		3.5
(-1.4)
A 		5
(0.4)
A 		2.6
(-2.5)
A 		5
B 3.2
(-2.8)
A 		19
(-0.3)
A 		40.6
(3)
A 		2.4
(-2.9)
A 		1.8
(-3)
A 		3.9
(-2.7)
A 		39
C 6.1
(-2.3)
A 		33.5
(3)
A 		29.1
(2.1)
A 		5.3
(-2.5)
A 		3.7
(-2.8)
A 		2.6
(-3)
A 		31
avr 5.5
(-2.3) 		18.2
(1.1) 		25.2
(3) 		3.7
(-2.8) 		3.5
(-2.9) 		3
(-3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.8
(-2.2)
A 		5.2
(3)
A 		1.3
(-3)
A 		1.8
(-2.2)
A 		4
B 1.3
(3)
A 		0.7
(-3)
A 		1.1
(1)
A 		0.7
(-3)
A 		1
C 2
(-1.9)
A 		4
(-0.1)
A 		0.8
(-3)
A 		7.5
(3)
A 		7
avr 1.7
(-1.4) 		3.3
(3) 		1.1
(-3) 		3.3
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 1.3
(1.7)
A 		0.8
(-1.7)
A 		1.3
(1.7)
A 		0.9
(-1)
A 		1.5
(3)
A 		0.6
(-3)
A 		1
B 1.1
(-2.7)
A 		6.3
(0.7)
A 		9.8
(3)
A 		0.6
(-3)
A 		0.7
(-2.9)
A 		1.4
(-2.5)
A 		9
C 2.3
(-2.1)
A 		10.2
(3)
A 		7.4
(1.2)
A 		1.1
(-2.9)
A 		1.2
(-2.8)
A 		0.9
(-3)
A 		9
avr 1.6
(-2.2) 		5.8
(2.5) 		6.2
(3) 		0.9
(-3) 		1.1
(-2.8) 		1
(-2.9) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172279_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8534
Sequence Type Exemplar sequence
Representative Public ID Y51H4A.6 NCBI
Target Description Y51H4A.6 /REP_DB=WormBase Gene ID /WP=CE25370 /TR=Q9U264 /GB=CAB63381.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070562(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070562 NCBI Caenorhabditis elegans Y51H4A.6 (Y51H4A.6) mRNA, complete cds. 11/11 None
GENEFINDER00000000218 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16528644:16533922:1 10/11 None
Y51H4A.6 ENSEMBL cdna:known chromosome:CEL140:IV:16533621:16533922:1 gene:Y51H4A.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000025550 1/11 Cross Hyb Matching Probes None
GENEFINDER00000003585 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16533626-16533928(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y51H4A.6
Entrez Gene 190147 Entrez gene
SwissProt Q9U264 EMBL-EBI
WormBase CE25370 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB63381 Hypothetical protein Y51H4A.6 [Caenorhabditis elegans] ref|NP_502963.1| Y51H4A.6 [Caenorhabditis elegans] 5.0E-40
blast CAB63381 Hypothetical protein Y51H4A.6 [Caenorhabditis elegans] ref|NP_502963.1| Y51H4A.6 [Caenorhabditis elegans] 1.0E-30
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000000218 1 7-24
Sequence
Target Sequence 
>C. ELEGANS:172279_X_AT
atgcatcgcaattattttaaaaaaaaacagaatttgatattttcagaaaagcagcaaagt
gtggagaagtatggagatgattgggttcaccactttcacacggcgaatgcacgagagacc
tttggaaagaagatttttggaattttttttcccagaaacctgtccatcgaaagaactcga
gaaactccaacagcgaagga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCATCGCAATTATTTTAAAAAAA 110 43 13 Antisense
AAGTGTGGAGAAGTATGGAGATGAT 298 157 69 Antisense
GGAGATGATTGGGTTCACCACTTTC 537 517 85 Antisense
ATGATTGGGTTCACCACTTTCACAC 347 47 89 Antisense
CACTTTCACACGGCGAATGCACGAG 112 197 103 Antisense
TCACACGGCGAATGCACGAGAGACC 135 629 108 Antisense
GAATGCACGAGAGACCTTTGGAAAG 73 331 117 Antisense
TTTTTCCCAGAAACCTGTCCATCGA 600 673 158 Antisense
TTCCCAGAAACCTGTCCATCGAAAG 102 667 161 Antisense
GAAACCTGTCCATCGAAAGAACTCG 393 357 167 Antisense
CTCGAGAAACTCCAACAGCGAAGGA 157 233 188 Antisense
Sequence Source Affymetrix Proprietary Database