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[172278_x_at]

Description Y47D3A.5 /REP_DB=WormBase Gene ID /WP=CE28128 /TR=Q9U2D1 /GB=CAB55095.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 85      4grp_total > 07      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 18.6
(1.5)
A 		0.6
(-3)
A 		24.8
(3)
A 		17.9
(1.3)
A 		24
B 6.9
(3)
A 		2.5
(-1.7)
A 		1.3
(-3)
A 		4.1
(-0)
A 		6
C 2.1
(1.4)
A 		2.4
(3)
A 		1.3
(-3)
A 		2
(0.8)
A 		1
avr 9.2
(3) 		1.8
(-3) 		9.1
(2.9) 		8
(2) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 5.9
(-2)
A 		2.2
(-2.9)
A 		1.7
(-3)
A 		17.9
(0.7)
A 		2.9
(-2.7)
A 		28.1
(3)
A 		26
B 0.7
(-3)
A 		2.3
(3)
A 		1.4
(-0.4)
A 		1.9
(1.5)
A 		1.2
(-1.1)
A 		2.1
(2.3)
A 		2
C 9.9
(-1.7)
A 		13.8
(-0.1)
A 		6.9
(-3)
A 		21.2
(3)
A 		20.9
(2.9)
A 		15.1
(0.4)
A 		14
avr 5.5
(-1.9) 		6.1
(-1.6) 		3.3
(-3) 		13.7
(2.3) 		8.3
(-0.5) 		15.1
(3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 6.8
(3)
A 		0.1
(-3)
A 		6.5
(2.7)
A 		2.6
(-0.8)
A 		7
B 2.2
(3)
A 		0.6
(-2.1)
A 		0.3
(-3)
A 		0.9
(-1.1)
A 		2
C 0.7
(3)
A 		0.7
(3)
A 		0.4
(-1.5)
A 		0.3
(-3)
A 		0
avr 3.2
(3) 		0.5
(-3) 		2.4
(1.2) 		1.3
(-1.2) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 1.1
(-2.3)
A 		0.8
(-2.6)
A 		0.4
(-3)
A 		4.5
(0.8)
A 		0.9
(-2.5)
A 		6.8
(3)
A 		6
B 0.3
(-3)
A 		0.8
(3)
A 		0.3
(-3)
A 		0.5
(-0.6)
A 		0.5
(-0.6)
A 		0.8
(3)
A 		1
C 3.7
(-0.7)
A 		4.2
(-0.1)
A 		1.8
(-3)
A 		4.3
(0)
A 		6.8
(3)
A 		5.1
(1)
A 		5
avr 1.7
(-1.4) 		1.9
(-1.1) 		0.8
(-3) 		3.1
(1.1) 		2.7
(0.4) 		4.2
(3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172278_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6046
Sequence Type Exemplar sequence
Representative Public ID Y47D3A.5 NCBI
Target Description Y47D3A.5 /REP_DB=WormBase Gene ID /WP=CE28128 /TR=Q9U2D1 /GB=CAB55095.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067038
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000007204 ENSEMBL cdna:SNAP chromosome:CEL140:III:11141314:11169973:-1 None
Y47D3A.5 ENSEMBL cdna:known chromosome:CEL140:III:11168800:11170438:-1 gene:Y47D3A.5 A 
NM_067038 NCBI Caenorhabditis elegans Y47D3A.5 (Y47D3A.5) mRNA, complete cds. A 
GENEFINDER00000007298 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11168800:11170109:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11169868-11170804(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y47D3A.5
Entrez Gene 176547 Entrez gene
SwissProt Q9U2D1 EMBL-EBI
WormBase CE34122 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB55095 Hypothetical protein Y47D3A.5 [Caenorhabditis elegans] ref|NP_499439.2| Y47D3A.5 [Caenorhabditis elegans] 1.0E-88
blast CAB55095 Hypothetical protein Y47D3A.5 [Caenorhabditis elegans] ref|NP_499439.2| Y47D3A.5 [Caenorhabditis elegans] 9.0E-88
blast CAE18009 Hypothetical protein Y47D3A.31 [Caenorhabditis elegans] ref|NP_001022878.1| Y47D3A.31 [Caenorhabditis elegans] 7.0E-87
blast CAB55095 Hypothetical protein Y47D3A.5 [Caenorhabditis elegans] ref|NP_499439.2| Y47D3A.5 [Caenorhabditis elegans] 4.0E-84
blast AAB04603 Hypothetical protein T28H11.7 [Caenorhabditis elegans] ref|NP_500703.1| T28H11.7 [Caenorhabditis elegans] 2.0E-59
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499439.2 1 181-203
Y47D3A.5 1 181-203
SNAP00000007204 1 182-204
GENEFINDER00000007298 1 199-221
Sequence
Target Sequence 
>C. ELEGANS:172278_X_AT
atgttccaaatatttcattctaatgaaacttttttacgccaaatttattcaagttttgag
attctagatggacgaagaatatgtgaatctcaccgaattgaagcctgcgcccgcagaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTTCCAAATATTTCATTCTAATG 180 47 13 Antisense
TCATTCTAATGAAACTTTTTTACGC 693 617 27 Antisense
TACGCCAAATTTATTCAAGTTTTGA 36 573 47 Antisense
CAAGTTTTGAGATTCTAGATGGACG 299 185 62 Antisense
GTTTTGAGATTCTAGATGGACGAAG 622 447 65 Antisense
GGACGAAGAATATGTGAATCTCACC 472 523 82 Antisense
GTGAATCTCACCGAATTGAAGCCTG 666 481 95 Antisense
GAATCTCACCGAATTGAAGCCTGCG 691 327 97 Antisense
AATCTCACCGAATTGAAGCCTGCGC 173 169 98 Antisense
GAATTGAAGCCTGCGCCCGCAGAAA 37 325 107 Antisense
AATTGAAGCCTGCGCCCGCAGAAAA 429 173 108 Antisense
Sequence Source Affymetrix Proprietary Database