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[172277_x_at]

Description Y44A6D.1 /REP_DB=WormBase Gene ID /WP=CE19159 /TR=Q9XXE3 /GB=CAA19514.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 27      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 5.9
(-3)
A 		40.2
(2.8)
A 		10.3
(-2.3)
A 		41.2
(3)
A 		35
B 27.4
(-0.7)
A 		66.2
(3)
A 		2.6
(-3)
A 		58.9
(2.3)
A 		64
C 29.4
(-1.1)
A 		17.5
(-2)
A 		5.3
(-3)
A 		81
(3)
P 		76
avr 20.9
(-1.4) 		41.3
(0.9) 		6.1
(-3) 		60.4
(3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 85.7
(3)
A 		4.2
(-3)
A 		4.9
(-2.9)
A 		16.2
(-2.1)
A 		28.5
(-1.2)
A 		4.2
(-3)
A 		82
B 21.4
(0.8)
A 		12.6
(-1.2)
A 		26.7
(2.1)
A 		30.7
(3)
A 		28.4
(2.5)
A 		5.1
(-3)
A 		26
C 6.9
(-2.7)
A 		40.2
(2.6)
A 		42.8
(3)
A 		27.3
(0.5)
A 		5
(-3)
A 		5.2
(-3)
A 		38
avr 38
(3) 		19
(-0.4) 		24.8
(0.6) 		24.7
(0.6) 		20.6
(-0.1) 		4.8
(-3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 2.2
(-3)
A 		8.7
(3)
A 		2.7
(-2.5)
A 		6
(0.5)
A 		7
B 8.8
(0.1)
A 		16.4
(3)
A 		0.6
(-3)
A 		12.6
(1.6)
A 		16
C 9.7
(1)
A 		5
(-1.4)
A 		1.8
(-3)
A 		13.7
(3)
P 		12
avr 6.9
(0.4) 		10
(2.5) 		1.7
(-3) 		10.8
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 15.8
(3)
A 		1.5
(-2.8)
A 		1.1
(-3)
A 		4.1
(-1.7)
A 		8.6
(0.1)
A 		1
(-3)
A 		15
B 7.4
(0.4)
A 		4.2
(-1.6)
A 		6.5
(-0.1)
A 		8.1
(0.9)
A 		11.5
(3)
A 		1.9
(-3)
A 		10
C 2.6
(-2.4)
A 		12.3
(3)
A 		10.9
(2.2)
A 		5.5
(-0.8)
A 		1.6
(-3)
A 		1.8
(-2.9)
A 		11
avr 8.6
(3) 		6
(0.8) 		6.2
(0.9) 		5.9
(0.7) 		7.2
(1.8) 		1.6
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172277_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14384
Sequence Type Exemplar sequence
Representative Public ID Y44A6D.1 NCBI
Target Description Y44A6D.1 /REP_DB=WormBase Gene ID /WP=CE19159 /TR=Q9XXE3 /GB=CAA19514.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075609(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075609 NCBI Caenorhabditis elegans Y44A6D.1 (Y44A6D.1) mRNA, complete cds. 11/11 None
Y44A6D.1 ENSEMBL cdna:known chromosome:CEL140:V:20785467:20785674:-1 gene:Y44A6D.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_060563 3/11 Cross Hyb Matching Probes None
GENEFINDER00000038730 1/11 Cross Hyb Matching Probes None
W04G5.3 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13740325-13740549(-) 91.85 91.85
chrV:20785466-20785674(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y44A6D.1
Entrez Gene 189899 Entrez gene
SwissProt Q9XXE3 EMBL-EBI
WormBase CE19159 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19514 Hypothetical protein Y44A6D.1 [Caenorhabditis elegans] ref|NP_508010.1| Y44A6D.1 [Caenorhabditis elegans] 2.0E-19
Sequence
Target Sequence 
>C. ELEGANS:172277_X_AT
atggagacgatttggattccccaccttcacacggccctagcatatatgcacgagagattt
ttggagttgtttattctccctgattcctgtccatcgaaaaaactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGAGACGATTTGGATTCCCCACC 115 53 13 Antisense
CTTCACACGGCCCTAGCATATATGC 278 221 37 Antisense
TCACACGGCCCTAGCATATATGCAC 158 629 39 Antisense
CACACGGCCCTAGCATATATGCACG 606 195 40 Antisense
CACGGCCCTAGCATATATGCACGAG 404 199 42 Antisense
GGCCCTAGCATATATGCACGAGAGA 217 543 45 Antisense
ATATGCACGAGAGATTTTTGGAGTT 218 21 56 Antisense
GCACGAGAGATTTTTGGAGTTGTTT 111 315 60 Antisense
GGAGTTGTTTATTCTCCCTGATTCC 556 517 75 Antisense
CCCTGATTCCTGTCCATCGAAAAAA 153 261 90 Antisense
TGATTCCTGTCCATCGAAAAAACTT 228 563 93 Antisense
Sequence Source Affymetrix Proprietary Database