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[172276_x_at]

Description T16A9.1 /REP_DB=WormBase Gene ID /WP=CE13720 /TR=Q22520 /GB=CAB00875.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 86      4grp_high_8_8 > 13      6grp_total > 76      4grp_total > 10      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 211
1 2 3 4 range
A 85.1
(-3)
P 		123
(0.2)
P 		105.5
(-1.3)
A 		157.1
(3)
A 		72
B 96.1
(-2.7)
P 		94.7
(-3)
P 		100.9
(-1.9)
P 		127.9
(3)
P 		33
C 90.4
(-2)
P 		108.1
(-1.5)
P 		56.7
(-3)
P 		267.9
(3)
P 		211
avr 90.5
(-2.8) 		108.6
(-1.7) 		87.7
(-3) 		184.3
(3) 		97

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 93.9
(-3)
M 		97.4
(-2.8)
P 		100.3
(-2.6)
P 		151.9
(0.4)
A 		132.1
(-0.7)
P 		195.1
(3)
P 		101
B 91.9
(-2.2)
P 		80.7
(-3)
P 		103.5
(-1.4)
P 		96.5
(-1.9)
P 		107
(-1.2)
P 		167.2
(3)
P 		87
C 97.7
(-3)
P 		136.4
(-0.5)
M 		112.6
(-2)
P 		130.3
(-0.9)
A 		113.7
(-2)
P 		191.8
(3)
P 		94
avr 94.5
(-3) 		104.8
(-2.3) 		105.5
(-2.3) 		126.2
(-0.9) 		117.6
(-1.5) 		184.7
(3) 		90
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 31
(3)
P 		26.7
(-0.2)
P 		27.6
(0.5)
A 		23
(-3)
A 		8
B 30.6
(3)
P 		23.4
(-3)
P 		23.4
(-3)
P 		27.3
(0.3)
P 		7
C 29.9
(-0.6)
P 		31.1
(-0.3)
P 		19.8
(-3)
P 		45.2
(3)
P 		25
avr 30.5
(2) 		27.1
(-0.4) 		23.6
(-3) 		31.8
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 17.3
(-3)
M 		34.7
(0.5)
P 		21.8
(-2.1)
P 		38.5
(1.2)
A 		39.9
(1.5)
P 		47.5
(3)
P 		30
B 32
(-1.9)
P 		26.9
(-2.7)
P 		25.1
(-3)
P 		25.6
(-2.9)
P 		43.5
(-0)
P 		62.3
(3)
P 		37
C 36.2
(-1.4)
P 		41.6
(-0.6)
M 		28.7
(-2.6)
P 		26.2
(-3)
A 		36.8
(-1.3)
P 		64.2
(3)
P 		38
avr 28.5
(-2.4) 		34.4
(-1.3) 		25.2
(-3) 		30.1
(-2.1) 		40.1
(-0.3) 		58
(3) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172276_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12703
Sequence Type Exemplar sequence
Representative Public ID T16A9.1 NCBI
Target Description T16A9.1 /REP_DB=WormBase Gene ID /WP=CE13720 /TR=Q22520 /GB=CAB00875.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074115(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074115 NCBI Caenorhabditis elegans T16A9.1 (T16A9.1) mRNA, complete cds. 11/11 A 
SNAP00000036503 ENSEMBL cdna:SNAP chromosome:CEL140:IV:2904148:2908518:-1 10/11 None
GENEFINDER00000036619 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2904148:2908518:-1 10/11 None
SNAP00000032387 ENSEMBL cdna:SNAP chromosome:CEL140:V:14204241:14206640:-1 10/11 None
GENEFINDER00000032394 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14204241:14206640:-1 10/11 None
T16A9.1 ENSEMBL cdna:known chromosome:CEL140:V:14204007:14206640:-1 gene:T16A9.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067919 8/11 Cross Hyb Matching Probes A 
NM_061031 7/11 Cross Hyb Matching Probes A 
NM_075057 6/11 Cross Hyb Matching Probes A 
SNAP00000038367 7/11 Cross Hyb Matching Probes None
GENEFINDER00000038392 7/11 Cross Hyb Matching Probes None
SNAP00000034693 8/11 Cross Hyb Matching Probes None
GENEFINDER00000034695 8/11 Cross Hyb Matching Probes None
SNAP00000009855 6/11 Cross Hyb Matching Probes None
GENEFINDER00000009867 6/11 Cross Hyb Matching Probes None
Y71A12B.7 7/11 Cross Hyb Matching Probes A 
Y55H10B.1 8/11 Cross Hyb Matching Probes A 
F57G4.3 6/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Ensembl T16A9.1
Entrez Gene 179923 Entrez gene
SwissProt Q22520 EMBL-EBI
WormBase CE13720 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB00875 Hypothetical protein T16A9.1 [Caenorhabditis elegans] ref|NP_506516.1| T16A9.1 [Caenorhabditis elegans] 0.0
blast CAC14422 Hypothetical protein Y71A12B.7 [Caenorhabditis elegans] ref|NP_493432.1| Y71A12B.7 [Caenorhabditis elegans] 0.0
blast AAF60812 Hypothetical protein Y55H10B.1 [Caenorhabditis elegans] ref|NP_500320.1| Y55H10B.1 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:172276_X_AT
gctaactcaagaactacactcaccgagagcgaaaacgaagtgaattttgacaatgaaacc
acttcgctgttctcgcctcaaagcacattcacgcctattttttcgtcaacgcgcctcgaa
gaaaggcaacttgtggaaagggagctcaaggacaaccatgccgaagagattcaactcgac
gctgacaaggccgacgagagccagctcaacgacagtcgaaggtcggctagaaatcgtacc
agttcaacaattttcgacccgtcgccaactcaaccaaacgatgatttcgaaatgtctccg
agccatagactattgcgttttgacgaaatcattgatctgtggggtatcgaactgtacacc
aatacgactgagagcctcaccttccgggccacactgggaactgagaacaattattctgtc
agacctgataccggaactgtgttgaaaagccgcatattgaaaattcggctcctcaacgat
gatgctccaaatgatgttttgacagtcttctacaagacgaaagttccattaattatattc
attcccagtttttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTAACTCAAGAACTACACTCACCG 95 303 1003 Antisense
ACAATGAAACCACTTCGCTGTTCTC 141 115 1052 Antisense
AAAGCACATTCACGCCTATTTTTTC 569 123 1082 Antisense
TTTTTCGTCAACGCGCCTCGAAGAA 637 609 1101 Antisense
GAGCTCAAGGACAACCATGCCGAAG 166 389 1144 Antisense
TCAACTCGACGCTGACAAGGCCGAC 371 627 1173 Antisense
GAGCCAGCTCAACGACAGTCGAAGG 325 385 1200 Antisense
CAGTTCAACAATTTTCGACCCGTCG 450 205 1242 Antisense
ACACCAATACGACTGAGAGCCTCAC 380 109 1358 Antisense
AATTCGGCTCCTCAACGATGATGCT 240 175 1464 Antisense
TAATTATATTCATTCCCAGTTTTTT 157 635 1532 Antisense
Sequence Source Affymetrix Proprietary Database