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[172274_x_at]

Description F26F2.5 /REP_DB=WormBase Gene ID /WP=CE19817 /TR=Q9XV54 /GB=CAB04191.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 35      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 3.5
(-2.4)
A 		26.7
(3)
A 		1.1
(-3)
A 		20
(1.4)
A 		26
B 1.4
(-3)
A 		15.9
(3)
A 		2.4
(-2.6)
A 		7.5
(-0.5)
A 		15
C 16.9
(3)
A 		0.7
(-3)
A 		2.2
(-2.4)
A 		4
(-1.8)
A 		16
avr 7.3
(-0.4) 		14.4
(3) 		1.9
(-3) 		10.5
(1.1) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 3.6
(-2.6)
A 		3.7
(-2.6)
A 		31.8
(3)
A 		1.7
(-3)
A 		22.2
(1.1)
A 		1.8
(-3)
A 		30
B 1.7
(-1.8)
A 		1.1
(-3)
A 		1.9
(-1.3)
A 		1.3
(-2.6)
A 		4
(3)
A 		3.6
(2.2)
A 		3
C 8
(0.3)
A 		14.1
(3)
A 		2.2
(-2.3)
A 		12.2
(2.2)
A 		0.6
(-3)
A 		2.5
(-2.2)
A 		14
avr 4.4
(-1.9) 		6.3
(-0.6) 		12
(3) 		5.1
(-1.4) 		8.9
(1) 		2.6
(-3) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1.3
(-1.9)
A 		5.8
(3)
A 		0.3
(-3)
A 		2.9
(-0.2)
A 		6
B 0.5
(-3)
A 		3.9
(3)
A 		0.5
(-3)
A 		1.6
(-1.1)
A 		3
C 5.6
(3)
A 		0.2
(-3)
A 		0.8
(-2.3)
A 		0.7
(-2.4)
A 		5
avr 2.5
(1.3) 		3.3
(3) 		0.5
(-3) 		1.7
(-0.4) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.7
(-2.7)
A 		1.3
(-2.2)
A 		6.9
(3)
A 		0.4
(-3)
A 		6.7
(2.8)
A 		0.4
(-3)
A 		7
B 0.6
(-1.6)
A 		0.4
(-2.5)
A 		0.5
(-2.1)
A 		0.3
(-3)
A 		1.6
(3)
A 		1.4
(2.1)
A 		1
C 3
(1.1)
A 		4.3
(3)
A 		0.6
(-2.4)
A 		2.5
(0.4)
A 		0.2
(-3)
A 		0.8
(-2.1)
A 		4
avr 1.4
(-1.4) 		2
(0.5) 		2.7
(2.7) 		1.1
(-2.4) 		2.8
(3) 		0.9
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172274_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13153
Sequence Type Exemplar sequence
Representative Public ID F26F2.5 NCBI
Target Description F26F2.5 /REP_DB=WormBase Gene ID /WP=CE19817 /TR=Q9XV54 /GB=CAB04191.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075569(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075569 NCBI Caenorhabditis elegans F26F2.5 (F26F2.5) mRNA, complete cds. 11/11 None
SNAP00000015791 ENSEMBL cdna:SNAP chromosome:CEL140:V:20571768:20572051:1 11/11 None
GENEFINDER00000015803 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20571768:20572051:1 11/11 None
F26F2.5 ENSEMBL cdna:known chromosome:CEL140:V:20571768:20572051:1 gene:F26F2.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_075566 2/11 Cross Hyb Matching Probes A 
SNAP00000015788 2/11 Cross Hyb Matching Probes None
GENEFINDER00000015804 2/11 Cross Hyb Matching Probes None
F26F2.2 2/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20571767-20572051(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F26F2.5
Entrez Gene 184986 Entrez gene
SwissProt Q9XV54 EMBL-EBI
WormBase CE19817 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04191 Hypothetical protein F26F2.5 [Caenorhabditis elegans] ref|NP_507970.1| F26F2.5 [Caenorhabditis elegans] 4.0E-37
blast CAB04188 Hypothetical protein F26F2.2 [Caenorhabditis elegans] ref|NP_507967.1| F26F2.2 [Caenorhabditis elegans] 3.0E-27
blast CAB04190 Hypothetical protein F26F2.4 [Caenorhabditis elegans] ref|NP_507969.1| F26F2.4 [Caenorhabditis elegans] 7.0E-26
Sequence
Target Sequence 
>C. ELEGANS:172274_X_AT
gagtagctacaatcaattgcgtatggcggaaatgatggataatcaaaacgcccggcaaaa
tgatctcacgaggcgaatgatggagatgaacaacagtgcaagattgtccgaccaggcaag
agacgatcgaaacgcgattcgaagtgagaataatctcaaagaagtctacaacaagttggt
caaagcacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTAGCTACAATCAATTGCGTATG 267 399 15 Antisense
ATTGCGTATGGCGGAAATGATGGAT 653 3 30 Antisense
GATGGATAATCAAAACGCCCGGCAA 499 407 48 Antisense
AACGCCCGGCAAAATGATCTCACGA 699 145 61 Antisense
CCCGGCAAAATGATCTCACGAGGCG 648 255 65 Antisense
TGATCTCACGAGGCGAATGATGGAG 662 563 75 Antisense
GATGGAGATGAACAACAGTGCAAGA 347 407 93 Antisense
ACAGTGCAAGATTGTCCGACCAGGC 622 107 107 Antisense
GTCCGACCAGGCAAGAGACGATCGA 63 475 120 Antisense
GAGACGATCGAAACGCGATTCGAAG 679 393 134 Antisense
CTACAACAAGTTGGTCAAAGCACAA 132 223 180 Antisense
Sequence Source Affymetrix Proprietary Database