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[172273_x_at]

Description ZK666.2 /REP_DB=WormBase Gene ID /WP=CE02387 /TR=Q23560 /GB=CAA88982.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 24      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 9
(-3)
A 		21.8
(-2.1)
A 		18.9
(-2.3)
A 		93.9
(3)
A 		85
B 52.8
(-0.3)
A 		23.4
(-2.5)
A 		99.5
(3)
A 		15.8
(-3)
A 		84
C 30.6
(-3)
A 		98.2
(3)
A 		38.2
(-2.3)
A 		90.1
(2.3)
A 		68
avr 30.8
(-3) 		47.8
(-0.2) 		52.2
(0.6) 		66.6
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 128
1 2 3 4 5 6 range
A 37
(-2.6)
A 		29.8
(-3)
A 		101.6
(0.9)
A 		45.4
(-2.2)
A 		135.7
(2.7)
A 		140.6
(3)
P 		111
B 23
(-2.4)
A 		17.1
(-2.9)
A 		23.8
(-2.3)
A 		15.4
(-3)
A 		88.2
(3)
A 		86.8
(2.9)
A 		73
C 75.1
(1.5)
A 		58
(0.2)
A 		60.7
(0.4)
A 		12.7
(-3)
A 		44.2
(-0.8)
A 		96.7
(3)
A 		84
avr 45
(-1.5) 		35
(-2.2) 		62
(-0.3) 		24.5
(-3) 		89.4
(1.7) 		108
(3) 		84
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 3.3
(-3)
A 		4.7
(-2.2)
A 		4.9
(-2.1)
A 		13.7
(3)
A 		10
B 16.8
(1.1)
A 		5.8
(-2.3)
A 		23.1
(3)
A 		3.4
(-3)
A 		20
C 10.1
(-3)
A 		28.2
(3)
A 		13.3
(-1.9)
A 		15.2
(-1.3)
A 		18
avr 10.1
(-3) 		12.9
(1.5) 		13.8
(3) 		10.8
(-1.9) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 6.8
(-3)
A 		10.6
(-2.3)
A 		22.1
(-0.3)
A 		11.5
(-2.2)
A 		41
(3)
A 		34.2
(1.8)
P 		34
B 8
(-2.3)
A 		5.7
(-2.7)
A 		5.8
(-2.7)
A 		4.1
(-3)
A 		35.8
(3)
A 		32.4
(2.4)
A 		32
C 27.8
(2.1)
A 		17.7
(0)
A 		15.5
(-0.4)
A 		2.6
(-3)
A 		14.3
(-0.6)
A 		32.4
(3)
A 		30
avr 14.2
(-1.2) 		11.3
(-1.8) 		14.5
(-1.1) 		6.1
(-3) 		30.4
(2.4) 		33
(3) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172273_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2820
Sequence Type Exemplar sequence
Representative Public ID ZK666.2 NCBI
Target Description ZK666.2 /REP_DB=WormBase Gene ID /WP=CE02387 /TR=Q23560 /GB=CAA88982.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063853(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063853 NCBI Caenorhabditis elegans ZK666.2 (ZK666.2) mRNA, complete cds. 11/11 None
SNAP00000005232 ENSEMBL cdna:SNAP chromosome:CEL140:II:10471606:10471800:-1 11/11 None
GENEFINDER00000005249 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10471606:10473564:-1 11/11 None
ZK666.2 ENSEMBL cdna:known chromosome:CEL140:II:10471606:10471800:-1 gene:ZK666.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11279762-11280400(+) 91.28 91.28
chrII:10471602-10471797(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK666.2
Entrez Gene 191380 Entrez gene
SwissProt Q23560 EMBL-EBI
WormBase CE02387 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T27951 hypothetical protein ZK666.10 - Caenorhabditis elegans 1.0E-139
blast CAA20951 Hypothetical protein Y102A5C.29 [Caenorhabditis elegans] ref|NP_507301.1| Serpentine Receptor, class I family member (sri-9) [Caenorhabditis elegans] 1.0E-131
blast CAB03314 Hypothetical protein T06E6.4 [Caenorhabditis elegans] ref|NP_506828.2| Serpentine Receptor, class I family member (sri-7) [Caenorhabditis elegans] 1.0E-100
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 5.7E-30
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000005249 6 20-42,62-84,105-122,168-190,211-233,243-265
Sequence
Target Sequence 
>C. ELEGANS:172273_X_AT
atgtacgcgccgggatatactccatatgttgctcatggttccccgtatggtgccccaatg
tatggatctccgtatggatacggatacgcgtcgcctgcctatgtgcaaccagttggacca
ccagtttatgctggacacggaggata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTACGCGCCGGGATATACTCCAT 568 45 13 Antisense
GCCGGGATATACTCCATATGTTGCT 397 283 21 Antisense
TCCATATGTTGCTCATGGTTCCCCG 650 587 33 Antisense
CCCGTATGGTGCCCCAATGTATGGA 175 261 54 Antisense
TATGGTGCCCCAATGTATGGATCTC 417 655 58 Antisense
ATGTATGGATCTCCGTATGGATACG 169 43 70 Antisense
TATGGATACGGATACGCGTCGCCTG 169 653 85 Antisense
GCCTGCCTATGTGCAACCAGTTGGA 241 283 105 Antisense
TGCAACCAGTTGGACCACCAGTTTA 304 573 116 Antisense
GGACCACCAGTTTATGCTGGACACG 439 523 127 Antisense
CAGTTTATGCTGGACACGGAGGATA 276 207 134 Antisense
Sequence Source Affymetrix Proprietary Database