[Home] | [Total List]

[172272_x_at]

Description F26F2.2 /REP_DB=WormBase Gene ID /WP=CE19814 /TR=Q9XV57 /GB=CAB04188.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 24      4grp_total > 02      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 159
1 2 3 4 range
A 10.4
(-2.9)
A 		15.3
(-2.6)
A 		7.7
(-3)
A 		134.4
(3)
A 		127
B 8.8
(3)
A 		5.6
(-3)
A 		5.8
(-2.6)
A 		8.1
(1.7)
A 		3
C 7.5
(-2.9)
A 		11.1
(-2.7)
A 		3.7
(-3)
A 		162.5
(3)
A 		159
avr 8.9
(-2.8) 		10.7
(-2.7) 		5.7
(-3) 		101.7
(3) 		96

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 51.9
(1.2)
A 		26.4
(-1.1)
A 		71.2
(3)
A 		8.6
(-2.7)
A 		41.5
(0.3)
A 		5.5
(-3)
A 		66
B 52.3
(1.8)
A 		13.2
(-3)
A 		41.5
(0.5)
A 		62.3
(3)
A 		29.8
(-1)
A 		34.5
(-0.4)
A 		49
C 35.6
(-0.9)
A 		94.7
(3)
A 		3.7
(-3)
A 		25.2
(-1.6)
A 		3.7
(-3)
A 		27.1
(-1.5)
A 		91
avr 46.6
(3) 		44.8
(2.6) 		38.8
(1.1) 		32
(-0.6) 		25
(-2.4) 		22.4
(-3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 3.8
(-2.4)
A 		3.3
(-2.6)
A 		2
(-3)
A 		19.7
(3)
A 		18
B 2.8
(3)
A 		1.4
(-2.6)
A 		1.3
(-3)
A 		1.7
(-1.4)
A 		2
C 2.5
(-2.7)
A 		3.2
(-2.6)
A 		1.3
(-3)
A 		27.4
(3)
A 		26
avr 3
(-2.4) 		2.6
(-2.6) 		1.5
(-3) 		16.3
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 9.6
(0.5)
A 		9.4
(0.4)
A 		15.5
(3)
A 		2.2
(-2.6)
A 		12.5
(1.7)
A 		1.3
(-3)
A 		14
B 18.2
(3)
A 		4.4
(-3)
A 		10.1
(-0.5)
A 		16.5
(2.3)
A 		12.1
(0.3)
A 		12.9
(0.7)
A 		14
C 13.2
(-0.4)
A 		28.9
(3)
A 		0.9
(-3)
A 		5.1
(-2.1)
A 		1.2
(-2.9)
A 		9.1
(-1.2)
A 		28
avr 13.7
(2.5) 		14.2
(3) 		8.8
(-2.1) 		7.9
(-2.9) 		8.6
(-2.3) 		7.8
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172272_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12826
Sequence Type Exemplar sequence
Representative Public ID F26F2.2 NCBI
Target Description F26F2.2 /REP_DB=WormBase Gene ID /WP=CE19814 /TR=Q9XV57 /GB=CAB04188.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075566(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075566 NCBI Caenorhabditis elegans F26F2.2 (F26F2.2) mRNA, complete cds. 11/11 None
GENEFINDER00000015804 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20560713:20562717:1 11/11 None
F26F2.2 ENSEMBL cdna:known chromosome:CEL140:V:20560713:20562717:1 gene:F26F2.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_075568 2/11 Cross Hyb Matching Probes A 
NM_075569 2/11 Cross Hyb Matching Probes A 
SNAP00000015788 5/11 Cross Hyb Matching Probes None
SNAP00000015790 2/11 Cross Hyb Matching Probes None
SNAP00000015791 2/11 Cross Hyb Matching Probes None
GENEFINDER00000015803 2/11 Cross Hyb Matching Probes None
F26F2.4 2/11 Cross Hyb Matching Probes A 
F26F2.5 2/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20560712-20562717(+) 100.0 100.0
chrV:20565625-20568047(+) 95.4 95.4
Public Domain and Genome References
Gene Title
Ensembl F26F2.2
Entrez Gene 184983 Entrez gene
SwissProt Q9XV57 EMBL-EBI
WormBase CE19814 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04188 Hypothetical protein F26F2.2 [Caenorhabditis elegans] ref|NP_507967.1| F26F2.2 [Caenorhabditis elegans] 1.0E-76
blast CAB04190 Hypothetical protein F26F2.4 [Caenorhabditis elegans] ref|NP_507969.1| F26F2.4 [Caenorhabditis elegans] 9.0E-34
blast CAB04191 Hypothetical protein F26F2.5 [Caenorhabditis elegans] ref|NP_507970.1| F26F2.5 [Caenorhabditis elegans] 2.0E-27
Sequence
Target Sequence 
>C. ELEGANS:172272_X_AT
gagcgacaacaatacactgcggatggcggaaatgctggataagcaaaattcccggcaaca
tgatttcatgaagcgaatgatggagatgaactacaatgcaagattgtccgaccaggcaag
agatgatcgaaacgcgattcgaagtgaaaataatctcaaagaagtcaatgctgaggacta
ttccaaacccaacactatgagtgacaacaatacactgcgtatggcggagatgctggataa
gcaaaactcccagcaaaatgatttcatgaagttcatgatggagatgaacaacagtgcaag
attgtccgaccaggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCGACAACAATACACTGCGGATG 133 387 15 Antisense
ACTGCGGATGGCGGAAATGCTGGAT 333 99 30 Antisense
AATTCCCGGCAACATGATTTCATGA 419 177 61 Antisense
GATGGAGATGAACTACAATGCAAGA 346 407 93 Antisense
GCAAGATTGTCCGACCAGGCAAGAG 402 321 112 Antisense
TGCTGAGGACTATTCCAAACCCAAC 405 581 183 Antisense
TTCCAAACCCAACACTATGAGTGAC 102 695 195 Antisense
ATACACTGCGTATGGCGGAGATGCT 307 25 224 Antisense
TGCGTATGGCGGAGATGCTGGATAA 680 581 230 Antisense
GCAAAACTCCCAGCAAAATGATTTC 182 319 255 Antisense
ACAGTGCAAGATTGTCCGACCAGGC 623 107 305 Antisense
Sequence Source Affymetrix Proprietary Database