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[172270_x_at]

Description R102.5B /REP_DB=WormBase Gene ID /WP=CE23915 /TR=Q9U389 /GB=CAB54290.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 85      6grp_high1_10_10 > 57      4grp_highest_8_8 > 31      4grp_high_8_8 > 05      6grp_highest_nonorm > 77      6grp_total > 58      4grp_total > 03      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3295
1 2 3 4 range
A 1153
(-2.1)
P 		782.5
(-2.8)
P 		664.5
(-3)
P 		3917.7
(3)
P 		3253
B 1252.8
(-1.8)
P 		784
(-2.7)
P 		622.9
(-3)
P 		3722.4
(3)
P 		3100
C 1407
(-1.5)
P 		874.2
(-2.6)
P 		653
(-3)
P 		3631.2
(3)
P 		2978
avr 1270.9
(-1.8) 		813.6
(-2.7) 		646.8
(-3) 		3757.1
(3) 		3110

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1052
1 2 3 4 5 6 range
A 1631.2
(2.5)
P 		1193.8
(-2.2)
P 		1265.9
(-1.4)
P 		1428.1
(0.3)
P 		1120.9
(-3)
P 		1680.9
(3)
P 		560
B 1689
(0.8)
P 		1308.5
(-1.5)
P 		1220.1
(-2.1)
P 		1073.9
(-3)
P 		1417.2
(-0.9)
P 		2039.9
(3)
P 		966
C 1429.6
(-0.8)
P 		1239.6
(-1.9)
P 		1049.5
(-3)
P 		1181.9
(-2.2)
P 		1231.1
(-2)
P 		2101.1
(3)
P 		1052
avr 1583.3
(0.2) 		1247.3
(-2.5) 		1178.5
(-3) 		1228
(-2.6) 		1256.4
(-2.4) 		1940.6
(3) 		762
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 649
1 2 3 4 range
A 419.8
(0.7)
P 		169.9
(-3)
P 		173.7
(-2.9)
P 		573.5
(3)
P 		404
B 399.5
(-0.6)
P 		193.6
(-2.5)
P 		144.3
(-3)
P 		793.2
(3)
P 		649
C 465.8
(0.7)
P 		251.3
(-2.6)
P 		227.6
(-3)
P 		612.3
(3)
P 		385
avr 428.4
(0.1) 		204.9
(-2.7) 		181.9
(-3) 		659.7
(3) 		478

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 523
1 2 3 4 5 6 range
A 300.7
(-2)
P 		424.6
(3)
P 		275.7
(-3)
P 		362.2
(0.5)
P 		338.2
(-0.5)
P 		409.3
(2.4)
P 		149
B 587.7
(0.8)
P 		435.5
(-1.1)
P 		296.3
(-2.9)
P 		284.4
(-3)
P 		575.8
(0.7)
P 		760.7
(3)
P 		476
C 529.9
(0.8)
P 		378.2
(-1.2)
P 		267.1
(-2.6)
P 		237.7
(-3)
P 		398.4
(-0.9)
P 		703.4
(3)
P 		466
avr 472.8
(0.4) 		412.8
(-0.7) 		279.7
(-3) 		294.8
(-2.7) 		437.5
(-0.3) 		624.5
(3) 		345
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172270_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8712
Sequence Type Exemplar sequence
Representative Public ID R102.5B NCBI
Target Description R102.5B /REP_DB=WormBase Gene ID /WP=CE23915 /TR=Q9U389 /GB=CAB54290.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069580(10), NM_069579(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069580 NCBI Caenorhabditis elegans R102.5a (R102.5) mRNA, complete cds. 10/11 A 
NM_069579 NCBI Caenorhabditis elegans R102.5b (R102.5) mRNA, complete cds. 11/11 A 
SNAP00000034332 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10695442:10697040:-1 9/11 None
GENEFINDER00000034341 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10695442:10697040:-1 9/11 None
R102.5a.2 ENSEMBL cdna:known chromosome:CEL140:IV:10695301:10697043:-1 gene:R102.5 10/11 None
R102.5a.1 ENSEMBL cdna:known chromosome:CEL140:IV:10695301:10697045:-1 gene:R102.5 10/11 None
R102.5b ENSEMBL cdna:known chromosome:CEL140:IV:10695352:10697040:-1 gene:R102.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10695412-10697046(-) 100.0 100.0
Public Domain and Genome References
Ensembl R102.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94359 Hypothetical protein R102.5a [Caenorhabditis elegans] ref|NP_501981.2| R102.5a [Caenorhabditis elegans] 0.0
blast CAB54290 Hypothetical protein R102.5b [Caenorhabditis elegans] ref|NP_501980.2| R102.5b [Caenorhabditis elegans] 0.0
blast CAB54290 Hypothetical protein R102.5b [Caenorhabditis elegans] ref|NP_501980.2| R102.5b [Caenorhabditis elegans] 1.0E-180
blast CAA94359 Hypothetical protein R102.5a [Caenorhabditis elegans] ref|NP_501981.2| R102.5a [Caenorhabditis elegans] 1.0E-180
Sequence
Target Sequence 
>C. ELEGANS:172270_X_AT
aagactcggctatcgagcagctcaaagtgcaattggctcagagccaacaggtggccgagc
tgtggaagcagggagccgagaaaaacagcaacgctcagtacagtgactcgaagactacta
ttgatagacttttggaggagaactcgaaattgagaaatctggttgatgaagaggttgctc
gccggctcgaagaatctgagcgtcgcaagctggcggaggatcagttgaaacatgcaagag
gaggctctgtctttgatccaccagcctcttttgttgcatcgcagttggcggaaagaacca
catattcattgaatctggaacatgagcttatcactctgagaaaagaattggaggaaacta
aagaagcactgaagaaatctgtagaagagtcgagcaacaaggatgagatagttagtgctc
tgcatgagcttgcaggaccaacaggagagcacccgcatgctcgcttcgaacgagcaggtg
atcaacagtctgaagcagaaatgtcgtcaacttggagtgctggaagacttctcgagctaa
gccgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGACTCGGCTATCGAGCAGCTCAA 276 153 776 Antisense
GGCTCAGAGCCAACAGGTGGCCGAG 181 539 810 Antisense
GGTGGCCGAGCTGTGGAAGCAGGGA 232 499 825 Antisense
AGCAACGCTCAGTACAGTGACTCGA 500 75 862 Antisense
GTTGATGAAGAGGTTGCTCGCCGGC 654 437 937 Antisense
GCTCGCCGGCTCGAAGAATCTGAGC 136 299 952 Antisense
GAATCTGAGCGTCGCAAGCTGGCGG 493 329 967 Antisense
CCTCTTTTGTTGCATCGCAGTTGGC 411 267 1040 Antisense
GCATGAGCTTGCAGGACCAACAGGA 113 311 1197 Antisense
CAACAGGAGAGCACCCGCATGCTCG 31 189 1214 Antisense
TGGAAGACTTCTCGAGCTAAGCCGT 490 545 1296 Antisense
Sequence Source Affymetrix Proprietary Database