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[172269_x_at]

Description F40D4.4 /REP_DB=WormBase Gene ID /WP=CE19838 /TR=Q9XTI3 /GB=CAA16427.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 65      4grp_total > 28      6grp_cgc > 46      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 33.1
(-1.1)
A 		49.9
(0.2)
A 		8.1
(-3)
A 		86.4
(3)
A 		78
B 40.5
(2)
A 		46.8
(3)
A 		14.8
(-1.9)
A 		7.8
(-3)
A 		39
C 50.4
(1.7)
A 		62.6
(3)
A 		5.9
(-3)
A 		53.7
(2.1)
A 		57
avr 41.3
(1.4) 		53.1
(3) 		9.6
(-3) 		49.3
(2.5) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 61.2
(2.5)
A 		24.3
(-2.9)
A 		41.2
(-0.4)
A 		23.8
(-3)
A 		31.8
(-1.8)
A 		64.3
(3)
A 		41
B 38.5
(1.1)
A 		27.1
(-1.9)
A 		45.9
(3)
A 		23.2
(-2.9)
A 		22.8
(-3)
A 		41.7
(1.9)
A 		23
C 4.2
(-3)
A 		26.4
(-0.8)
A 		57.8
(2.3)
A 		65.1
(3)
A 		19.2
(-1.5)
A 		36.3
(0.2)
A 		61
avr 34.6
(-0.5) 		25.9
(-2.7) 		48.3
(3) 		37.4
(0.2) 		24.6
(-3) 		47.4
(2.8) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 12.1
(2.7)
A 		10.8
(1.9)
A 		2.1
(-3)
A 		12.7
(3)
A 		11
B 12.9
(3)
A 		11.6
(2.3)
A 		3.4
(-2.1)
A 		1.7
(-3)
A 		11
C 16.7
(2.5)
A 		18
(3)
A 		2.1
(-3)
A 		9.1
(-0.4)
A 		16
avr 13.9
(3) 		13.5
(2.8) 		2.5
(-3) 		7.8
(-0.2) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 11.3
(0.3)
A 		8.6
(-1.4)
A 		9
(-1.1)
A 		6
(-3)
A 		9.6
(-0.8)
A 		15.7
(3)
A 		10
B 13.4
(1.6)
A 		9
(-1.2)
A 		11.1
(0.2)
A 		6.1
(-3)
A 		9.3
(-1)
A 		15.6
(3)
A 		10
C 1.5
(-3)
A 		8.1
(0)
A 		14.7
(3)
A 		13.1
(2.3)
A 		6.2
(-0.9)
A 		12.2
(1.9)
A 		13
avr 8.7
(-2.7) 		8.6
(-2.8) 		11.6
(0.1) 		8.4
(-3) 		8.4
(-3) 		14.5
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172269_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13940
Sequence Type Exemplar sequence
Representative Public ID F40D4.4 NCBI
Target Description F40D4.4 /REP_DB=WormBase Gene ID /WP=CE19838 /TR=Q9XTI3 /GB=CAA16427.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F40D4.4 ENSEMBL cdna:pseudogene chromosome:CEL140:V:17186974:17188661:1 gene:F40D4.4 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000026450 7/11 Cross Hyb Matching Probes None
SNAP00000027627 1/11 Cross Hyb Matching Probes None
SNAP00000027628 2/11 Cross Hyb Matching Probes None
GENEFINDER00000027639 2/11 Cross Hyb Matching Probes None
GENEFINDER00000027640 1/11 Cross Hyb Matching Probes None
F20E11.13 1/11 Cross Hyb Matching Probes A 
F20E11.3 1/11 Cross Hyb Matching Probes A 
F20E11.8 2/11 Cross Hyb Matching Probes A 
F20E11.9 1/11 Cross Hyb Matching Probes A 
F20E11.14 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17186973-17188083(+) 100.0 100.0
Public Domain and Genome References
Ensembl F40D4.4
Sequence
Target Sequence 
>C. ELEGANS:172269_X_AT
tacacgctcttaccatacttgaactttccactcacacttttggagcatacatcatcattg
caaaaacgccgaaaaggctggaatccgtgaaggccagcatgctatatcttcactttgtcg
gagcatttgtagatgttggtttcagtgttttcactatgccagtcctacatttgcctgttt
gtggaggccatccgctcgggttactttcatttctcggcgttccagtctcattgcaaactt
atttcggactttctttacctacattaatggtcgcgaccattgtggtatttctggaagatc
gtcgatatcggttggttaacggtcaaaagtcgagcaaaatccgaaaatggtatcggttat
tatttgatgcttttcattatgtttatgccacaacataccatgcgccgaaaattcagtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACACGCTCTTACCATACTTGAACT 125 643 68 Antisense
TGAACTTTCCACTCACACTTTTGGA 309 571 87 Antisense
GAATCCGTGAAGGCCAGCATGCTAT 91 329 148 Antisense
GCATGCTATATCTTCACTTTGTCGG 85 311 164 Antisense
TTCACTATGCCAGTCCTACATTTGC 69 687 217 Antisense
GCGTTCCAGTCTCATTGCAAACTTA 685 285 284 Antisense
TATTTCGGACTTTCTTTACCTACAT 488 659 307 Antisense
TTACCTACATTAATGGTCGCGACCA 256 673 322 Antisense
TGCTTTTCATTATGTTTATGCCACA 42 581 435 Antisense
TTTATGCCACAACATACCATGCGCC 125 673 449 Antisense
CATACCATGCGCCGAAAATTCAGTG 18 215 461 Antisense
Sequence Source Affymetrix Proprietary Database