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[172267_x_at]

Description K06A4.6 /REP_DB=WormBase Gene ID /WP=CE06110 /TR=Q21255 /GB=CAA94784.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 40      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 17.9
(-3)
A 		24.8
(-2.5)
A 		102.9
(3)
A 		23
(-2.6)
A 		85
B 6.6
(-3)
A 		67.4
(3)
A 		32.3
(-0.5)
A 		56.9
(2)
A 		61
C 37.5
(-1.4)
A 		24.3
(-3)
A 		73.3
(3)
A 		43.4
(-0.7)
A 		49
avr 20.7
(-3) 		38.8
(-0.8) 		69.5
(3) 		41.1
(-0.5) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 24.3
(-2.3)
A 		93.6
(3)
A 		14.8
(-3)
A 		42.2
(-0.9)
A 		73.3
(1.5)
A 		47.9
(-0.5)
A 		79
B 81.1
(3)
A 		10.2
(-3)
A 		61.8
(1.4)
A 		20.3
(-2.1)
A 		57.3
(1)
A 		24.1
(-1.8)
A 		71
C 24.3
(-2.7)
A 		65.7
(0)
A 		110.3
(3)
A 		20.4
(-3)
A 		77.8
(0.8)
A 		54.7
(-0.7)
A 		90
avr 43.2
(-0.8) 		56.5
(1.1) 		62.3
(2) 		27.6
(-3) 		69.5
(3) 		42.2
(-0.9) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 6.5
(-2.2)
A 		5.4
(-2.5)
A 		26.9
(3)
A 		3.4
(-3)
A 		24
B 2.1
(-3)
A 		16.7
(3)
A 		7.5
(-0.8)
A 		12.1
(1.1)
A 		15
C 12.4
(-1.2)
A 		7
(-3)
A 		25.5
(3)
A 		7.3
(-2.9)
A 		19
avr 7
(-3) 		9.7
(-1.8) 		20
(3) 		7.6
(-2.7) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 4.5
(-2.7)
A 		33.3
(3)
A 		3.2
(-3)
A 		10.7
(-1.5)
A 		22.1
(0.8)
A 		11.7
(-1.3)
A 		30
B 28.2
(3)
A 		3.4
(-3)
A 		15
(-0.2)
A 		5.4
(-2.5)
A 		23.3
(1.8)
A 		9
(-1.6)
A 		25
C 9
(-1.8)
A 		20
(1)
A 		28.1
(3)
A 		4.1
(-3)
A 		25.2
(2.3)
A 		18.3
(0.6)
A 		24
avr 13.9
(-0.4) 		18.9
(1.4) 		15.4
(0.1) 		6.7
(-3) 		23.5
(3) 		13
(-0.8) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172267_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11452
Sequence Type Exemplar sequence
Representative Public ID K06A4.6 NCBI
Target Description K06A4.6 /REP_DB=WormBase Gene ID /WP=CE06110 /TR=Q21255 /GB=CAA94784.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073045(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073045 NCBI Caenorhabditis elegans K06A4.6 (K06A4.6) mRNA, complete cds. 11/11 None
SNAP00000041742 ENSEMBL cdna:SNAP chromosome:CEL140:V:9483144:9483721:-1 11/11 None
GENEFINDER00000041751 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9483144:9483709:-1 10/11 None
K06A4.6 ENSEMBL cdna:known chromosome:CEL140:V:9483144:9483721:-1 gene:K06A4.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_058945 2/11 Cross Hyb Matching Probes A 
SNAP00000009714 2/11 Cross Hyb Matching Probes None
GENEFINDER00000009720 2/11 Cross Hyb Matching Probes None
SNAP00000041743 3/11 Cross Hyb Matching Probes None
GENEFINDER00000041749 3/11 Cross Hyb Matching Probes None
Y47D9A.3 2/11 Cross Hyb Matching Probes A 
K06A4.8 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9484764-9485598(+) 90.79 90.79
chrV:9483143-9483721(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K06A4.6
Entrez Gene 187048 Entrez gene
SwissProt Q21255 EMBL-EBI
WormBase CE06110 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94784 Hypothetical protein K06A4.6 [Caenorhabditis elegans] ref|NP_505446.1| K06A4.6 [Caenorhabditis elegans] 1.0E-39
blast CAA94784 Hypothetical protein K06A4.6 [Caenorhabditis elegans] ref|NP_505446.1| K06A4.6 [Caenorhabditis elegans] 4.0E-31
Sequence
Target Sequence 
>C. ELEGANS:172267_X_AT
gagtttgcaaatggagcaactccacgatgccatgaattactccggcaactcctgcttctc
aatcagctcctgccaagggtggtgtcggtgtgccaaaaaggcttcaaaggagaaccagga
tgcagacaggaagactgaggaagaagacaagactccgccaccagccaaccgtgatgatga
aactaaggcgccaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTTTGCAAATGGAGCAACTCCAC 467 399 15 Antisense
GAGCAACTCCACGATGCCATGAATT 297 391 28 Antisense
GCCATGAATTACTCCGGCAACTCCT 607 275 43 Antisense
TCAATCAGCTCCTGCCAAGGGTGGT 707 631 73 Antisense
TGCCAAGGGTGGTGTCGGTGTGCCA 328 585 85 Antisense
GGTGTCGGTGTGCCAAAAAGGCTTC 684 497 95 Antisense
AAAGGCTTCAAAGGAGAACCAGGAT 558 119 111 Antisense
GAACCAGGATGCAGACAGGAAGACT 1 347 126 Antisense
GGAAGAAGACAAGACTCCGCCACCA 290 531 153 Antisense
GCCACCAGCCAACCGTGATGATGAA 20 281 171 Antisense
GTGATGATGAAACTAAGGCGCCAGA 39 483 185 Antisense
Sequence Source Affymetrix Proprietary Database