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[172266_x_at]

Description C01B9.1 /REP_DB=WormBase Gene ID /WP=CE17359 /TR=O45231 /GB=CAB07551.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 17      6grp_high1_10_10 > 60      6grp_highest_nonorm > 80      6grp_total > 40      4grp_total > 54      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 418
1 2 3 4 range
A 483.8
(3)
P 		290.4
(0.1)
P 		315.6
(0.4)
P 		90
(-3)
A 		394
B 455.7
(3)
P 		230.6
(-0.7)
P 		241.2
(-0.6)
P 		95.4
(-3)
A 		360
C 421.8
(3)
P 		221.7
(-0.4)
P 		237
(-0.1)
P 		66.2
(-3)
A 		356
avr 453.8
(3) 		247.6
(-0.3) 		264.6
(-0.1) 		83.9
(-3) 		370

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 252
1 2 3 4 5 6 range
A 223.2
(0.1)
P 		272.8
(1.4)
P 		209.7
(-0.3)
P 		336.4
(3)
P 		214.2
(-0.2)
P 		103.8
(-3)
P 		233
B 137.9
(-1.1)
P 		169.8
(0)
P 		251.3
(3)
P 		218.1
(1.8)
P 		169.5
(0)
P 		85.6
(-3)
P 		166
C 191.3
(0.1)
P 		211.2
(0.6)
P 		294.5
(3)
P 		251
(1.8)
P 		199
(0.3)
P 		84
(-3)
P 		211
avr 184.1
(0.1) 		217.9
(1.3) 		251.8
(2.4) 		268.5
(3) 		194.2
(0.5) 		91.1
(-3) 		177
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 165
1 2 3 4 range
A 176.1
(3)
P 		63
(-1.2)
P 		82.5
(-0.4)
P 		13.2
(-3)
A 		163
B 145.3
(3)
P 		57
(-1.2)
P 		55.9
(-1.3)
P 		20.3
(-3)
A 		125
C 139.6
(3)
P 		63.7
(-0.5)
P 		82.6
(0.3)
P 		11.2
(-3)
A 		128
avr 153.7
(3) 		61.2
(-1) 		73.7
(-0.5) 		14.9
(-3) 		139

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 41.1
(-1.7)
P 		97
(3)
P 		45.7
(-1.3)
P 		85.3
(2)
P 		64.6
(0.3)
P 		25.3
(-3)
P 		72
B 48
(-0.4)
P 		56.5
(1)
P 		61
(1.7)
P 		57.8
(1.2)
P 		68.9
(3)
P 		31.9
(-3)
P 		37
C 70.9
(2.5)
P 		64.4
(1.6)
P 		75
(3)
P 		50.5
(-0.1)
P 		64.4
(1.6)
P 		28.1
(-3)
P 		47
avr 53.3
(0.4) 		72.6
(3) 		60.6
(1.4) 		64.5
(1.9) 		66
(2.1) 		28.4
(-3) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172266_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2739
Sequence Type Exemplar sequence
Representative Public ID C01B9.1 NCBI
Target Description C01B9.1 /REP_DB=WormBase Gene ID /WP=CE17359 /TR=O45231 /GB=CAB07551.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064484(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064484 NCBI Caenorhabditis elegans C01B9.1 (C01B9.1) mRNA, complete cds. 11/11 A 
GENEFINDER00000033542 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13772469:13779599:1 11/11 None
C01B9.1 ENSEMBL cdna:known chromosome:CEL140:II:13771472:13778912:1 gene:C01B9.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_074976 1/11 Cross Hyb Matching Probes A 
SNAP00000033539 6/11 Cross Hyb Matching Probes None
SNAP00000027357 3/11 Cross Hyb Matching Probes None
GENEFINDER00000027364 3/11 Cross Hyb Matching Probes None
SNAP00000034109 1/11 Cross Hyb Matching Probes None
GENEFINDER00000034118 1/11 Cross Hyb Matching Probes None
K10G4.1 1/11 Cross Hyb Matching Probes A 
K03D7.3 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13772330-13778892(+) 99.98 100.0
Public Domain and Genome References
Gene Title
Ensembl C01B9.1
Entrez Gene 175023 Entrez gene
SwissProt O45231 EMBL-EBI
WormBase CE17359 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07551 Hypothetical protein C01B9.1 [Caenorhabditis elegans] ref|NP_496885.1| C01B9.1 [Caenorhabditis elegans] 0.0
blast CAB04646 Hypothetical protein R10E8.6 [Caenorhabditis elegans] ref|NP_507572.1| R10E8.6 [Caenorhabditis elegans] 0.0
blast CAB07258 Hypothetical protein K10G4.1 [Caenorhabditis elegans] ref|NP_507377.1| K10G4.1 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.8E-6
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.7E-9
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 4.9E-5
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.9E-14
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.8E-6
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.7E-9
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 9.0E-6
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.9E-14
Pfam IPR000698 EMBL-EBI Arrestin 2.3E-5
Sequence
Target Sequence 
>C. ELEGANS:172266_X_AT
gacaagtcaagaaaattctcctgccaaatgcacttcggagccacaagttccagttagtaa
atttagatttaaccgtaagaaacgaatcggaaattttggagcttctcgaatgctttgacg
ctggaaaattgaaatgtctgattttggaattcgctagaaaaaaggaagaggagactggag
ggacaatagaaattaatcgaatagcggagatggatcactggagaaatctggaggagttcg
cagtggttgactatgtgatcaatgcggatccgttgaactttaaccaattattcgggcatt
tcaaaacactcaacgtttgcctgcaaaacttcacagttgataacttgcttttcatgaaac
agaaatccctagcatcctcattgtatttacatttcatttgcgaaaactttgaactggaga
acttgtacgagctcattggacgccctttactcgaaactgcgaatgcagtcaaataccgaa
aatggttcttcaagttaattggctctatagaaaacactctgatattgataattcacactc
aaaatggcaaaatccatattcaaataactagaattcccacatcagatgttcccca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAAGTCAAGAAAATTCTCCTGCC 406 365 4193 Antisense
TTCTCCTGCCAAATGCACTTCGGAG 321 691 4208 Antisense
CACTTCGGAGCCACAAGTTCCAGTT 211 159 4223 Antisense
GGAGCTTCTCGAATGCTTTGACGCT 340 521 4290 Antisense
GGAGGAGTTCGCAGTGGTTGACTAT 528 515 4422 Antisense
ATGCGGATCCGTTGAACTTTAACCA 74 41 4454 Antisense
AAAACACTCAACGTTTGCCTGCAAA 367 129 4495 Antisense
ATCCCTAGCATCCTCATTGTATTTA 687 37 4557 Antisense
ACTTGTACGAGCTCATTGGACGCCC 155 103 4613 Antisense
GACGCCCTTTACTCGAAACTGCGAA 91 287 4631 Antisense
GAATTCCCACATCAGATGTTCCCCA 488 323 4763 Antisense
Sequence Source Affymetrix Proprietary Database