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[172264_x_at]

Description F26F2.4 /REP_DB=WormBase Gene ID /WP=CE19816 /TR=Q9XV55 /GB=CAB04190.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 06      4grp_total > 12      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 113
1 2 3 4 range
A 27.8
(-2.3)
A 		38.2
(-1.6)
A 		15.3
(-3)
A 		115.9
(3)
A 		101
B 30.1
(3)
A 		2.5
(-3)
A 		12.9
(-0.7)
A 		23.7
(1.6)
A 		28
C 65.6
(1.9)
A 		39.5
(-0.3)
A 		6.9
(-3)
A 		79.5
(3)
P 		73
avr 41.2
(-0.1) 		26.7
(-1.5) 		11.7
(-3) 		73
(3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 75.6
(3)
A 		29.4
(-0.8)
A 		69
(2.5)
A 		2.5
(-3)
A 		26.2
(-1.1)
A 		2.8
(-3)
A 		73
B 58.9
(3)
A 		37.3
(0.6)
A 		21.3
(-1.2)
A 		5.7
(-3)
A 		28.7
(-0.4)
A 		5.5
(-3)
A 		53
C 31
(0.5)
A 		51.6
(3)
A 		3.5
(-2.7)
A 		29
(0.3)
A 		3.2
(-2.8)
A 		1.3
(-3)
A 		50
avr 55.2
(3) 		39.4
(1.2) 		31.3
(0.2) 		12.4
(-1.9) 		19.4
(-1.1) 		3.2
(-3) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 10.1
(-0.2)
A 		8.3
(-1)
A 		4
(-3)
A 		17
(3)
A 		13
B 9.6
(3)
A 		0.6
(-3)
A 		3
(-1.4)
A 		5.1
(0)
A 		9
C 21.7
(3)
A 		11.4
(-0.2)
A 		2.4
(-3)
A 		13.4
(0.4)
P 		19
avr 13.8
(3) 		6.8
(-0.9) 		3.1
(-3) 		11.8
(1.9) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 13.9
(2.5)
A 		10.4
(1.1)
A 		15
(3)
A 		0.6
(-3)
A 		7.9
(0)
A 		0.7
(-3)
A 		14
B 20.5
(3)
A 		12.4
(0.4)
A 		5.2
(-1.8)
A 		1.5
(-3)
A 		11.7
(0.2)
A 		2.1
(-2.8)
A 		19
C 11.5
(1.4)
A 		15.7
(3)
A 		0.9
(-2.8)
A 		5.8
(-0.9)
A 		1
(-2.8)
A 		0.4
(-3)
A 		15
avr 15.3
(3) 		12.8
(1.9) 		7
(-0.5) 		2.6
(-2.4) 		6.9
(-0.5) 		1.1
(-3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172264_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13046
Sequence Type Exemplar sequence
Representative Public ID F26F2.4 NCBI
Target Description F26F2.4 /REP_DB=WormBase Gene ID /WP=CE19816 /TR=Q9XV55 /GB=CAB04190.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075568(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075568 NCBI Caenorhabditis elegans F26F2.4 (F26F2.4) mRNA, complete cds. 11/11 None
SNAP00000015790 ENSEMBL cdna:SNAP chromosome:CEL140:V:20567767:20568047:1 11/11 None
F26F2.4 ENSEMBL cdna:known chromosome:CEL140:V:20567767:20568047:1 gene:F26F2.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_075566 3/11 Cross Hyb Matching Probes A 
SNAP00000015788 1/11 Cross Hyb Matching Probes None
GENEFINDER00000015804 3/11 Cross Hyb Matching Probes None
F26F2.2 3/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20567766-20568047(+) 100.0 100.0
chrV:20560712-20562717(+) 92.41 93.25
Public Domain and Genome References
Gene Title
Ensembl F26F2.4
Entrez Gene 184985 Entrez gene
SwissProt Q9XV55 EMBL-EBI
WormBase CE19816 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04190 Hypothetical protein F26F2.4 [Caenorhabditis elegans] ref|NP_507969.1| F26F2.4 [Caenorhabditis elegans] 5.0E-37
blast CAB04188 Hypothetical protein F26F2.2 [Caenorhabditis elegans] ref|NP_507967.1| F26F2.2 [Caenorhabditis elegans] 1.0E-33
blast CAB04191 Hypothetical protein F26F2.5 [Caenorhabditis elegans] ref|NP_507970.1| F26F2.5 [Caenorhabditis elegans] 7.0E-26
Sequence
Target Sequence 
>C. ELEGANS:172264_X_AT
gagcgacaacaatacactgcggatggcggaaatgctggataagcaaaactcccggcaaca
tgatttcatgaagcttatgatggagatgaataacagtgcgagattgtccgatcaggcaag
agatgatcgaaacgcgattcgaaatgagaataatctcaaagaagtcttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCGACAACAATACACTGCGGATG 132 387 15 Antisense
ACTGCGGATGGCGGAAATGCTGGAT 332 99 30 Antisense
TGCTGGATAAGCAAAACTCCCGGCA 307 579 47 Antisense
GCAAAACTCCCGGCAACATGATTTC 183 319 57 Antisense
AACTCCCGGCAACATGATTTCATGA 419 141 61 Antisense
ATGGAGATGAATAACAGTGCGAGAT 70 53 94 Antisense
ACAGTGCGAGATTGTCCGATCAGGC 621 107 107 Antisense
GTGCGAGATTGTCCGATCAGGCAAG 20 477 110 Antisense
CGAGATTGTCCGATCAGGCAAGAGA 684 249 113 Antisense
AGGCAAGAGATGATCGAAACGCGAT 204 51 128 Antisense
GAGAATAATCTCAAAGAAGTCTTCA 356 391 160 Antisense
Sequence Source Affymetrix Proprietary Database