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[172263_x_at]

Description F38C2.1 /REP_DB=WormBase Gene ID /WP=CE16001 /TR=O45488 /GB=CAB05188.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 68      4grp_total > 02      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 165
1 2 3 4 range
A 6.8
(-2.7)
A 		2.3
(-3)
A 		2.2
(-3)
A 		83.9
(3)
A 		82
B 9.2
(-2.8)
A 		7
(-2.8)
A 		2.8
(-3)
A 		158.2
(3)
P 		155
C 2.9
(-3)
A 		3.5
(-3)
A 		2.5
(-3)
A 		166.7
(3)
M 		164
avr 6.3
(-2.8) 		4.3
(-2.9) 		2.5
(-3) 		136.3
(3) 		134

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 46.1
(3)
A 		2.4
(-3)
A 		16.8
(-1)
A 		23.2
(-0.1)
A 		30.4
(0.8)
A 		20.8
(-0.5)
A 		44
B 3.6
(-3)
A 		8.3
(-1.9)
A 		30.2
(3)
A 		4.6
(-2.8)
A 		6.8
(-2.3)
A 		6.7
(-2.3)
A 		27
C 1.4
(-3)
A 		10.7
(-2)
A 		4
(-2.7)
A 		3.6
(-2.8)
A 		5.1
(-2.6)
A 		57.3
(3)
A 		56
avr 17
(-0.2) 		7.1
(-3) 		17
(-0.2) 		10.5
(-2) 		14.1
(-1) 		28.3
(3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 2.5
(-2)
A 		0.5
(-3)
A 		0.6
(-2.9)
A 		12.3
(3)
A 		12
B 2.9
(-2.6)
A 		1.7
(-2.8)
A 		0.7
(-3)
A 		33.7
(3)
P 		33
C 1
(-3)
A 		1
(-3)
A 		0.9
(-3)
A 		28.1
(3)
M 		27
avr 2.1
(-2.7) 		1.1
(-2.9) 		0.7
(-3) 		24.7
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 8.5
(2.5)
A 		0.8
(-3)
A 		3.7
(-0.9)
A 		5.9
(0.6)
A 		9.2
(3)
A 		5.1
(0.1)
A 		8
B 1.3
(-2.9)
A 		2.8
(-1.4)
A 		7.3
(3)
A 		1.2
(-3)
A 		2.8
(-1.4)
A 		2.5
(-1.7)
A 		6
C 0.5
(-3)
A 		3.3
(-2.1)
A 		1
(-2.8)
A 		0.7
(-2.9)
A 		1.6
(-2.6)
A 		19.2
(3)
A 		19
avr 3.4
(-2) 		2.3
(-3) 		4
(-1.5) 		2.6
(-2.7) 		4.5
(-1) 		8.9
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172263_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9779
Sequence Type Exemplar sequence
Representative Public ID F38C2.1 NCBI
Target Description F38C2.1 /REP_DB=WormBase Gene ID /WP=CE16001 /TR=O45488 /GB=CAB05188.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070526(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070526 NCBI Caenorhabditis elegans F38C2.1 (F38C2.1) mRNA, complete cds. 11/11 None
SNAP00000039182 ENSEMBL cdna:SNAP chromosome:CEL140:IV:16248915:16250228:1 11/11 None
GENEFINDER00000039196 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16248915:16254364:1 11/11 None
F38C2.1 ENSEMBL cdna:known chromosome:CEL140:IV:16248915:16250228:1 gene:F38C2.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_070522 1/11 Cross Hyb Matching Probes A 
GENEFINDER00000037545 1/11 Cross Hyb Matching Probes None
H25K10.4 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16249743-16250234(+) 90.0 93.33
Public Domain and Genome References
Gene Title
Ensembl F38C2.1
Entrez Gene 185459 Entrez gene
SwissProt O45488 EMBL-EBI
WormBase CE16001 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05188 Hypothetical protein F38C2.1 [Caenorhabditis elegans] ref|NP_502927.1| F38C2.1 [Caenorhabditis elegans] 5.0E-57
blast CAB05188 Hypothetical protein F38C2.1 [Caenorhabditis elegans] ref|NP_502927.1| F38C2.1 [Caenorhabditis elegans] 7.0E-55
blast CAB07232 Hypothetical protein H25K10.4 [Caenorhabditis elegans] ref|NP_502923.1| H25K10.4 [Caenorhabditis elegans] 2.0E-50
blast CAB07232 Hypothetical protein H25K10.4 [Caenorhabditis elegans] ref|NP_502923.1| H25K10.4 [Caenorhabditis elegans] 9.0E-50
blast AAY86271 Hypothetical protein R09E12.9 [Caenorhabditis elegans] 6.0E-45
Sequence
Target Sequence 
>C. ELEGANS:172263_X_AT
atggcttcttatacttctgaacaagcagaagcccttctgaagctacaatttgataaatac
gcaaaattcatcgacgatgaggtgtgggcggaggtagaagggtattatcatccaagcgga
gttctggttcataagggtaaggaggcggtttatggaaataaagacaaatccacctacatt
gcaaagttcgcggagggaaccggaaaatcggtgggtactactacaaacgccaagtacgaa
ggatccggtgactacctcattatcaccgccgacttttcttctgaaactgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCTTCTTATACTTCTGAACAAG 63 53 13 Antisense
TCTGAACAAGCAGAAGCCCTTCTGA 414 607 28 Antisense
GCCCTTCTGAAGCTACAATTTGATA 30 287 43 Antisense
GAGGTGTGGGCGGAGGTAGAAGGGT 365 399 91 Antisense
GAAGGGTATTATCATCCAAGCGGAG 530 333 109 Antisense
CAAGCGGAGTTCTGGTTCATAAGGG 268 181 125 Antisense
AAGACAAATCCACCTACATTGCAAA 391 153 173 Antisense
CTACATTGCAAAGTTCGCGGAGGGA 632 225 186 Antisense
GTGGGTACTACTACAAACGCCAAGT 193 487 223 Antisense
GAAGGATCCGGTGACTACCTCATTA 643 333 250 Antisense
CGCCGACTTTTCTTCTGAAACTGAA 187 257 279 Antisense
Sequence Source Affymetrix Proprietary Database