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[172262_x_at]

Description F35E8.5 /REP_DB=WormBase Gene ID /WP=CE15955 /TR=O45455 /GB=CAB04301.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 34      4grp_high_8_8 > 12      6grp_total > 11      4grp_total > 12      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 671
1 2 3 4 range
A 213.3
(-1.1)
P 		46.5
(-3)
A 		86
(-2.5)
P 		565.6
(3)
P 		519
B 202.5
(0.7)
P 		143.5
(-1)
P 		73.7
(-3)
M 		280.4
(3)
P 		207
C 194.3
(-1.8)
P 		144.1
(-2.3)
P 		63.8
(-3)
P 		717.3
(3)
P 		654
avr 203.4
(-1.3) 		111.4
(-2.5) 		74.5
(-3) 		521.1
(3) 		447

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 132
1 2 3 4 5 6 range
A 136
(-0.8)
P 		130.1
(-1.2)
P 		185.3
(3)
P 		131.8
(-1.1)
P 		131.1
(-1.1)
P 		106.7
(-3)
P 		79
B 132
(-1.1)
P 		210.9
(3)
P 		122.2
(-1.6)
P 		113.7
(-2)
P 		95
(-3)
P 		135.4
(-0.9)
P 		116
C 112.7
(-2.1)
P 		225
(3)
P 		119.9
(-1.8)
P 		118.8
(-1.8)
M 		92.9
(-3)
P 		113.8
(-2.1)
P 		132
avr 126.9
(-1.5) 		188.7
(3) 		142.5
(-0.4) 		121.4
(-1.9) 		106.3
(-3) 		118.6
(-2.1) 		82
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 77.7
(2.6)
P 		10.1
(-3)
A 		22.5
(-2)
P 		82.8
(3)
P 		73
B 64.6
(3)
P 		35.4
(-0.7)
P 		17.1
(-3)
M 		59.7
(2.4)
P 		48
C 64.3
(-0.4)
P 		41.4
(-1.8)
P 		22.3
(-3)
P 		121
(3)
P 		99
avr 68.9
(1.3) 		29
(-2.3) 		20.6
(-3) 		87.8
(3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 25.1
(-3)
P 		46.3
(3)
P 		40.4
(1.3)
P 		33.4
(-0.7)
P 		39.6
(1.1)
P 		26
(-2.7)
P 		21
B 45.9
(-0.6)
P 		70.2
(3)
P 		29.7
(-3)
P 		30.1
(-2.9)
P 		38.6
(-1.7)
P 		50.5
(0.1)
P 		41
C 41.8
(-0.6)
P 		68.7
(3)
P 		30.5
(-2.1)
P 		23.9
(-3)
M 		30.1
(-2.2)
P 		38.1
(-1.1)
P 		45
avr 37.6
(-1.4) 		61.7
(3) 		33.5
(-2.2) 		29.1
(-3) 		36.1
(-1.7) 		38.2
(-1.3) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172262_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13220
Sequence Type Exemplar sequence
Representative Public ID F35E8.5 NCBI
Target Description F35E8.5 /REP_DB=WormBase Gene ID /WP=CE15955 /TR=O45455 /GB=CAB04301.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000009726 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9231739:9234950:-1 None
GENEFINDER00000014049 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:2608008:2611999:1 None
GENEFINDER00000002807 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7711813:7713233:1 None
GENEFINDER00000043115 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:15105834:15109008:1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000037835 1/11 Cross Hyb Matching Probes None
SNAP00000026717 1/11 Cross Hyb Matching Probes None
GENEFINDER00000026721 4/11 Cross Hyb Matching Probes None
GENEFINDER00000011197 1/11 Cross Hyb Matching Probes None
GENEFINDER00000002796 2/11 Cross Hyb Matching Probes None
SNAP00000009704 1/11 Cross Hyb Matching Probes None
GENEFINDER00000019529 1/11 Cross Hyb Matching Probes None
GENEFINDER00000031810 2/11 Cross Hyb Matching Probes None
GENEFINDER00000035480 3/11 Cross Hyb Matching Probes None
GENEFINDER00000009498 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3761314-3761781(+) 19.88 92.05
chrII:15105777-15106251(+) 22.32 90.52
chrIII:7549678-7550152(+) 19.57 90.21
chrIII:2611577-2612051(+) 19.57 90.21
chrV:8154161-8154635(+) 19.88 90.52
chrV:7712813-7713287(+) 19.88 90.21
chrI:1900429-1900902(-) 19.88 90.83
chrV:15906165-15906750(-) 26.91 100.0
chrV:15912104-15912689(-) 26.91 100.0
chrV:9231686-9232160(-) 19.88 91.13
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_505391 F07C3.3 [Caenorhabditis elegans] gb|AAG24028.1| Hypothetical protein F07C3.3 [Caenorhabditis elegans] 0.0
blast CAE72136 Hypothetical protein CBG19234 [Caenorhabditis briggsae] 0.0
blast AAK93869 Hypothetical protein Y71H2B.5 [Caenorhabditis elegans] ref|NP_497589.2| Y71H2B.5 [Caenorhabditis elegans] 2.0E-86
blast CAE64541 Hypothetical protein CBG09284 [Caenorhabditis briggsae] 2.0E-62
blast XP_635931 hypothetical protein DDB0188699 [Dictyostelium discoideum] gb|EAL62423.1| hypothetical protein DDB0188699 [Dictyostelium discoideum] 2.0E-52
blast ZP_00622903 similar to Selenocysteine lyase [Silicibacter sp. TM1040] gb|EAN55445.1| similar to Selenocysteine lyase [Silicibacter sp. TM1040] 3.0E-46
blast T25496 hypothetical protein C03G6.5 - Caenorhabditis elegans 8.0E-34
blast T25786 hypothetical protein F47D2.9 - Caenorhabditis elegans 2.0E-19
blast NP_504869 Serpentine Receptor, class H family member (srh-187) [Caenorhabditis elegans] gb|AAG24063.1| Serpentine receptor, class h protein 187 [Caenorhabditis elegans] 5.0E-17
blast T34205 hypothetical protein D2024.9 - Caenorhabditis elegans 6.0E-9
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.1E-25
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 5.1E-33
Pfam IPR004245 EMBL-EBI Protein of unknown function DUF229 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000002807 4 5-27,42-64,92-123,127-149
GENEFINDER00000009726 1 17-34
Sequence
Target Sequence 
>C. ELEGANS:172262_X_AT
tgaaggggagtagagtttgtggggaaatatatgtttctgactctaattttgcccctgatg
ccgaatatcgatgtgaaaaaattcaaaaaaatttccctgattttatattaatttttaaaa
tccgaaaattcattggatgcctatatgtgagttttcaaacgctgaattttcccgccagag
aattttccccgcccacgaaaccgtgccgcaacacaaattcgacgggaaacaaggtggagg
caaccgtggacaataaatctattacttattcgtgtgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAGGGGAGTAGAGTTTGTGGGGA 44 403 32 Antisense
ATGTTTCTGACTCTAATTTTGCCCC 3 49 62 Antisense
TGCCCCTGATGCCGAATATCGATGT 386 585 81 Antisense
TGGATGCCTATATGTGAGTTTTCAA 212 551 165 Antisense
TCAAACGCTGAATTTTCCCGCCAGA 498 629 186 Antisense
TGAATTTTCCCGCCAGAGAATTTTC 486 573 194 Antisense
GAAACCGTGCCGCAACACAAATTCG 394 357 228 Antisense
ACCGTGCCGCAACACAAATTCGACG 336 87 231 Antisense
AACAAGGTGGAGGCAACCGTGGACA 208 135 259 Antisense
GGCAACCGTGGACAATAAATCTATT 276 529 270 Antisense
TAAATCTATTACTTATTCGTGTGTA 367 639 285 Antisense
Sequence Source Affymetrix Proprietary Database