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[172261_x_at]

Description ZK666.4 /REP_DB=WormBase Gene ID /WP=CE02389 /TR=Q23562 /GB=CAA88983.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 08      4grp_total > 43      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 129
1 2 3 4 range
A 56.3
(-1)
A 		105.6
(3)
A 		31.3
(-3)
A 		51.2
(-1.4)
A 		74
B 38.8
(-0.6)
A 		78.2
(3)
A 		71.6
(2.4)
A 		12.5
(-3)
A 		66
C 72.3
(-1.8)
A 		141.4
(3)
M 		55.1
(-3)
P 		123.4
(1.7)
M 		86
avr 55.8
(-2.7) 		108.4
(3) 		52.7
(-3) 		62.4
(-2) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 120
1 2 3 4 5 6 range
A 147.3
(3)
A 		61.8
(-1.5)
A 		63.5
(-1.4)
M 		32.5
(-3)
A 		43.2
(-2.4)
A 		61.4
(-1.5)
A 		115
B 95.7
(3)
A 		46.6
(-1.3)
A 		27.4
(-3)
A 		61.6
(0)
A 		55.6
(-0.5)
A 		43.1
(-1.6)
A 		68
C 60
(-3)
P 		94.6
(0.1)
A 		128
(3)
P 		91.6
(-0.2)
A 		70.7
(-2.1)
A 		63.7
(-2.7)
A 		68
avr 101
(3) 		67.7
(-1.4) 		73
(-0.7) 		61.9
(-2.2) 		56.5
(-2.9) 		56.1
(-3) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 20.5
(2.1)
A 		22.9
(3)
A 		8.2
(-2.7)
A 		7.5
(-3)
A 		15
B 12.4
(0.5)
A 		19.3
(3)
A 		16.6
(2)
A 		2.7
(-3)
A 		17
C 23.9
(-1.7)
A 		40.6
(3)
M 		19.2
(-3)
P 		20.8
(-2.6)
M 		21
avr 18.9
(-0) 		27.6
(3) 		14.7
(-1.5) 		10.3
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 27.2
(3)
A 		22
(1.4)
A 		13.8
(-1.2)
M 		8.2
(-3)
A 		13
(-1.5)
A 		15
(-0.9)
A 		19
B 33.3
(3)
A 		15.5
(-1)
A 		6.7
(-3)
A 		16.3
(-0.8)
A 		22.6
(0.6)
A 		16.1
(-0.9)
A 		27
C 22.2
(-1.4)
P 		28.9
(1.4)
A 		32.6
(3)
P 		18.4
(-3)
A 		22.9
(-1.1)
A 		21.3
(-1.8)
A 		14
avr 27.6
(3) 		22.1
(0.5) 		17.7
(-1.5) 		14.3
(-3) 		19.5
(-0.7) 		17.5
(-1.6) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172261_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3524
Sequence Type Exemplar sequence
Representative Public ID ZK666.4 NCBI
Target Description ZK666.4 /REP_DB=WormBase Gene ID /WP=CE02389 /TR=Q23562 /GB=CAA88983.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063856(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063856 NCBI Caenorhabditis elegans ZK666.4 (ZK666.4) mRNA, complete cds. 11/11 None
SNAP00000005235 ENSEMBL cdna:SNAP chromosome:CEL140:II:10477169:10477603:1 11/11 None
GENEFINDER00000005250 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10477169:10477603:1 11/11 None
ZK666.4 ENSEMBL cdna:known chromosome:CEL140:II:10477169:10477603:1 gene:ZK666.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_063849 4/11 Cross Hyb Matching Probes A 
NM_063847 1/11 Cross Hyb Matching Probes A 
SNAP00000007629 1/11 Cross Hyb Matching Probes None
SNAP00000007631 4/11 Cross Hyb Matching Probes None
GENEFINDER00000007635 4/11 Cross Hyb Matching Probes None
GENEFINDER00000007638 1/11 Cross Hyb Matching Probes None
ZK673.5 1/11 Cross Hyb Matching Probes A 
ZK673.10 4/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10477165-10477600(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK666.4
Entrez Gene 191382 Entrez gene
SwissProt Q23562 EMBL-EBI
WormBase CE02389 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88983 Hypothetical protein ZK666.4 [Caenorhabditis elegans] ref|NP_496257.1| ZK666.4 [Caenorhabditis elegans] 4.0E-73
blast CAA88484 Hypothetical protein ZK673.10 [Caenorhabditis elegans] ref|NP_496250.1| ZK673.10 [Caenorhabditis elegans] 1.0E-61
blast CAA88483 Hypothetical protein ZK673.5 [Caenorhabditis elegans] ref|NP_496248.1| ZK673.5 [Caenorhabditis elegans] sp|Q09664|YS55_CAEEL Hypothetical protein ZK673.5 in chromosome II 1.0E-49
Sequence
Target Sequence 
>C. ELEGANS:172261_X_AT
aatacactcaaattccttcctttgctctctacaacaatgcttccatcttccaattcttcc
cccgtaataagcgtctcagtactcatcagaaatcttgccttgatgagcatgctcgaaaaa
tggctgttttcatgatggagagacaagaagagtaccgttactacgagaacttggccaatc
aggaacaattctccgatgatgcctgcttcagtgacactggaatggactccggattctgca
gtggagacacttcaactggacaatcagcttcaacatctcctgctccagcccatctcattc
caaacccattctttgatccagaatatgttgcttccaagacaactatgaaactcgttgcca
atccattctacaacccaaagctcgccaaggaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATACACTCAAATTCCTTCCTTTGC 73 173 17 Antisense
CTTCCTTTGCTCTCTACAACAATGC 602 219 32 Antisense
ACAACAATGCTTCCATCTTCCAATT 129 113 47 Antisense
TTCCCCCGTAATAAGCGTCTCAGTA 84 697 73 Antisense
AACAATTCTCCGATGATGCCTGCTT 170 135 200 Antisense
TGATGCCTGCTTCAGTGACACTGGA 203 567 213 Antisense
AATGGACTCCGGATTCTGCAGTGGA 388 161 237 Antisense
GACAATCAGCTTCAACATCTCCTGC 127 365 275 Antisense
ATCTCATTCCAAACCCATTCTTTGA 46 33 308 Antisense
GAAACTCGTTGCCAATCCATTCTAC 143 357 363 Antisense
TACAACCCAAAGCTCGCCAAGGAAA 74 637 385 Antisense
Sequence Source Affymetrix Proprietary Database