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[172260_at]

Description W06G6.9 /REP_DB=WormBase Gene ID /WP=CE20154 /TR=Q9U340 /GB=CAB63325.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 58      4grp_total > 03      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 218
1 2 3 4 range
A 33.2
(-1.8)
A 		2.7
(-3)
A 		2
(-3)
A 		153.9
(3)
P 		152
B 3
(-2.9)
A 		5.3
(-2.8)
A 		1.5
(-3)
A 		145
(3)
P 		144
C 34.3
(-2.1)
A 		6.1
(-2.9)
A 		1.6
(-3)
A 		219.6
(3)
P 		218
avr 23.5
(-2.2) 		4.7
(-2.9) 		1.7
(-3) 		172.8
(3) 		171

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 2.9
(-2.8)
A 		1.9
(-3)
A 		2.5
(-2.9)
A 		3.2
(-2.8)
A 		2.6
(-2.9)
A 		36
(3)
A 		34
B 5.2
(-2)
A 		5.7
(-1.9)
A 		4.8
(-2.1)
A 		1.2
(-3)
A 		2.7
(-2.6)
A 		25.2
(3)
A 		24
C 21.2
(3)
A 		3
(-2.5)
A 		2.4
(-2.6)
A 		1.6
(-2.9)
A 		1.2
(-3)
A 		18.6
(2.2)
A 		20
avr 9.8
(-1.1) 		3.5
(-2.6) 		3.2
(-2.7) 		2
(-3) 		2.2
(-3) 		26.6
(3) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 12.1
(0.2)
A 		0.6
(-3)
A 		0.5
(-3)
A 		22.5
(3)
P 		22
B 1
(-2.9)
A 		1.3
(-2.8)
A 		0.4
(-3)
A 		30.9
(3)
P 		31
C 11.3
(-1.2)
A 		1.8
(-2.8)
A 		0.6
(-3)
A 		37
(3)
P 		36
avr 8.1
(-1.5) 		1.2
(-2.9) 		0.5
(-3) 		30.1
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.5
(-3)
A 		0.7
(-2.9)
A 		0.6
(-2.9)
A 		0.8
(-2.8)
A 		0.8
(-2.8)
A 		8.8
(3)
A 		8
B 1.8
(-2)
A 		1.9
(-1.9)
A 		1.2
(-2.4)
A 		0.3
(-3)
A 		1.1
(-2.5)
A 		9.4
(3)
A 		9
C 7.9
(3)
A 		0.9
(-2.5)
A 		0.6
(-2.8)
A 		0.3
(-3)
A 		0.4
(-2.9)
A 		6.2
(1.7)
A 		8
avr 3.4
(-0.7) 		1.2
(-2.4) 		0.8
(-2.8) 		0.5
(-3) 		0.8
(-2.8) 		8.1
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172260_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13057
Sequence Type Exemplar sequence
Representative Public ID W06G6.9 NCBI
Target Description W06G6.9 /REP_DB=WormBase Gene ID /WP=CE20154 /TR=Q9U340 /GB=CAB63325.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074811(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074811 NCBI Caenorhabditis elegans W06G6.9 (W06G6.9) mRNA, complete cds. 11/11 None
GENEFINDER00000000248 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16648579:16649748:-1 11/11 None
W06G6.9 ENSEMBL cdna:known chromosome:CEL140:V:16648579:16648980:-1 gene:W06G6.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16648663-16648809(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W06G6.9
Entrez Gene 189259 Entrez gene
SwissProt Q9U340 EMBL-EBI
WormBase CE36411 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB63325 Hypothetical protein W06G6.9 [Caenorhabditis elegans] ref|NP_507212.2| W06G6.9 [Caenorhabditis elegans] 1.0E-46
blast CAB63325 Hypothetical protein W06G6.9 [Caenorhabditis elegans] ref|NP_507212.2| W06G6.9 [Caenorhabditis elegans] 3.0E-46
blast CAB63324 Hypothetical protein W06G6.10 [Caenorhabditis elegans] ref|NP_507213.1| W06G6.10 [Caenorhabditis elegans] 4.0E-19
Sequence
Target Sequence 
>C. ELEGANS:172260_AT
ttgctgtacaacttccgtggacactataagcgagagggagcagcccactggcagtgggca
gca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGCTGTACAACTTCCGTGGACACT 259 697 19 Antisense
TGCTGTACAACTTCCGTGGACACTA 98 581 20 Antisense
GCTGTACAACTTCCGTGGACACTAT 597 295 21 Antisense
TGTACAACTTCCGTGGACACTATAA 353 559 23 Antisense
ACAACTTCCGTGGACACTATAAGCG 390 111 26 Antisense
AACTTCCGTGGACACTATAAGCGAG 173 137 28 Antisense
TTCCGTGGACACTATAAGCGAGAGG 22 685 31 Antisense
GTGGACACTATAAGCGAGAGGGAGC 44 489 35 Antisense
TAAGCGAGAGGGAGCAGCCCACTGG 568 635 45 Antisense
AGGGAGCAGCCCACTGGCAGTGGGC 261 57 53 Antisense
AGCAGCCCACTGGCAGTGGGCAGCA 145 75 57 Antisense
Sequence Source Affymetrix Proprietary Database