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[172259_x_at]

Description C31H5.4 /REP_DB=WormBase Gene ID /WP=CE17484 /TR=O62082 /GB=CAB07842.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 49      6grp_high1_10_10 > 93      4grp_highest_8_8 > 23      4grp_high_8_8 > 13      6grp_highest_nonorm > 48      6grp_total > 84      4grp_total > 11      6grp_highest_sub > 04_05_06      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2957
1 2 3 4 range
A 1638.6
(-2.6)
P 		1898.6
(-2.1)
P 		1455.4
(-3)
P 		4255.6
(3)
P 		2800
B 1595.9
(-2.5)
P 		1697.9
(-2.2)
P 		1370.6
(-3)
P 		3978.5
(3)
P 		2608
C 1888.7
(-1.7)
P 		1731.9
(-2)
P 		1298.6
(-3)
P 		3926.7
(3)
P 		2628
avr 1707.7
(-2.3) 		1776.1
(-2.1) 		1374.9
(-3) 		4053.6
(3) 		2679

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2605
1 2 3 4 5 6 range
A 3611
(-0.6)
P 		2871.6
(-3)
P 		4423.7
(2)
P 		4724.6
(3)
P 		4533.5
(2.4)
P 		4209.2
(1.3)
P 		1853
B 2994.4
(-3)
P 		3305.6
(-2.2)
P 		4308.7
(0.2)
P 		4439.7
(0.5)
P 		5476.2
(3)
P 		4523.7
(0.7)
P 		2482
C 3181
(-3)
P 		3262.4
(-2.8)
P 		3308.9
(-2.6)
P 		5350.3
(3)
P 		4825.5
(1.5)
P 		4942.1
(1.9)
P 		2169
avr 3262.1
(-2.6) 		3146.5
(-3) 		4013.8
(-0.1) 		4838.2
(2.6) 		4945.1
(3) 		4558.3
(1.7) 		1799
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 530
1 2 3 4 range
A 596.6
(2.3)
P 		412.1
(-2.2)
P 		380.5
(-3)
P 		622.9
(3)
P 		242
B 508.9
(-0.8)
P 		419.3
(-1.8)
P 		317.6
(-3)
P 		847.8
(3)
P 		530
C 625.2
(1.9)
P 		497.9
(-1.7)
P 		452.6
(-3)
P 		662.1
(3)
P 		210
avr 576.9
(0.5) 		443.1
(-1.9) 		383.6
(-3) 		710.9
(3) 		327

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1559
1 2 3 4 5 6 range
A 665.7
(-3)
P 		1021.3
(0)
P 		963.4
(-0.5)
P 		1198.3
(1.6)
P 		1368
(3)
P 		1024.8
(0.1)
P 		702
B 1041.9
(-3)
P 		1100.3
(-2.7)
P 		1046.3
(-3)
P 		1175.9
(-2.3)
P 		2224.9
(3)
P 		1686.9
(0.3)
P 		1183
C 1179.1
(-0.5)
P 		995.5
(-1.9)
P 		842.2
(-3)
P 		1076
(-1.3)
P 		1561.5
(2.3)
P 		1654.4
(3)
P 		812
avr 962.2
(-2.9) 		1039
(-2.3) 		950.6
(-3) 		1150.1
(-1.4) 		1718.1
(3) 		1455.4
(0.9) 		768
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172259_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2026
Sequence Type Exemplar sequence
Representative Public ID C31H5.4 NCBI
Target Description C31H5.4 /REP_DB=WormBase Gene ID /WP=CE17484 /TR=O62082 /GB=CAB07842.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060029(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060029 NCBI Caenorhabditis elegans C31H5.4 (C31H5.4) mRNA, complete cds. 11/11 None
SNAP00000044188 ENSEMBL cdna:SNAP chromosome:CEL140:I:9050520:9050702:-1 11/11 None
GENEFINDER00000044197 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9050520:9050702:-1 11/11 None
C31H5.4 ENSEMBL cdna:known chromosome:CEL140:I:9050520:9050702:-1 gene:C31H5.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9050450-9050633(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C31H5.4
Entrez Gene 172724 Entrez gene
SwissProt O62082 EMBL-EBI
WormBase CE17484 Wormbase
Sequence
Target Sequence 
>C. ELEGANS:172259_X_AT
ctctacacaattgctgccgttggagcctgtgcatacttcgcaaccacagactcaatcgtc
aaaaaagtagtcgtggacactgtaaaagccgtcgtctggccaacaagtgatgagcaagtc
gccgaaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCTACACAATTGCTGCCGTTGGAG 327 229 16 Antisense
CACAATTGCTGCCGTTGGAGCCTGT 59 195 21 Antisense
TTGGAGCCTGTGCATACTTCGCAAC 190 709 35 Antisense
TGCATACTTCGCAACCACAGACTCA 708 577 45 Antisense
TCGCAACCACAGACTCAATCGTCAA 405 601 53 Antisense
CAATCGTCAAAAAAGTAGTCGTGGA 412 179 68 Antisense
AGTCGTGGACACTGTAAAAGCCGTC 692 21 84 Antisense
GGACACTGTAAAAGCCGTCGTCTGG 86 527 90 Antisense
TGTAAAAGCCGTCGTCTGGCCAACA 312 559 96 Antisense
CGTCGTCTGGCCAACAAGTGATGAG 55 247 105 Antisense
AAGTGATGAGCAAGTCGCCGAAAAA 557 157 120 Antisense
Sequence Source Affymetrix Proprietary Database