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[172258_x_at]

Description W04E12.3 /REP_DB=WormBase Gene ID /WP=CE18998 /TR=Q9XUL4 /GB=CAB04912.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 12      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 12.6
(-2.2)
A 		4.6
(-2.9)
A 		2.9
(-3)
A 		71.9
(3)
A 		69
B 18.6
(-0.8)
A 		32.9
(3)
A 		17.3
(-1.1)
A 		10.2
(-3)
A 		23
C 21.2
(-1)
A 		2.2
(-3)
A 		3.7
(-2.8)
A 		60.6
(3)
A 		58
avr 17.5
(-1.6) 		13.2
(-2.2) 		8
(-3) 		47.6
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 9.7
(0.6)
A 		5.5
(-1.2)
A 		14.3
(2.5)
A 		1.8
(-2.8)
A 		15.4
(3)
A 		1.3
(-3)
A 		14
B 5.4
(0.4)
A 		8.6
(3)
A 		2.6
(-1.8)
A 		2.5
(-1.9)
A 		1.1
(-3)
A 		2.4
(-2)
A 		8
C 1.2
(-3)
A 		9.3
(1.6)
A 		4.1
(-1.3)
A 		11.7
(3)
A 		10.7
(2.4)
A 		4.6
(-1.1)
A 		11
avr 5.4
(-0.5) 		7.8
(1.8) 		7
(1) 		5.3
(-0.6) 		9.1
(3) 		2.8
(-3) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 4.6
(-0.6)
A 		1
(-2.9)
A 		0.8
(-3)
A 		10.5
(3)
A 		10
B 5.9
(0.8)
A 		8.1
(3)
A 		4
(-1.2)
A 		2.2
(-3)
A 		6
C 7
(1)
A 		0.6
(-3)
A 		1.3
(-2.6)
A 		10.2
(3)
A 		10
avr 5.8
(1.1) 		3.2
(-1.7) 		2
(-3) 		7.6
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 1.8
(-0.9)
A 		2
(-0.6)
A 		3.1
(0.9)
A 		0.5
(-2.7)
A 		4.6
(3)
A 		0.3
(-3)
A 		4
B 1.9
(0.5)
A 		2.9
(3)
A 		0.6
(-2.8)
A 		0.7
(-2.5)
A 		0.5
(-3)
A 		0.9
(-2)
A 		2
C 0.5
(-3)
A 		2.8
(1.6)
A 		1
(-2)
A 		2.4
(0.8)
A 		3.5
(3)
A 		1.6
(-0.8)
A 		3
avr 1.4
(-1.5) 		2.6
(2.1) 		1.6
(-0.9) 		1.2
(-2.1) 		2.9
(3) 		0.9
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172258_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13987
Sequence Type Exemplar sequence
Representative Public ID W04E12.3 NCBI
Target Description W04E12.3 /REP_DB=WormBase Gene ID /WP=CE18998 /TR=Q9XUL4 /GB=CAB04912.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075425(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075425 NCBI Caenorhabditis elegans W04E12.3 (W04E12.3) mRNA, complete cds. 11/11 None
W04E12.3 ENSEMBL cdna:known chromosome:CEL140:V:19739949:19740310:1 gene:W04E12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19739948-19740310(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W04E12.3
Entrez Gene 189190 Entrez gene
SwissProt Q9XUL4 EMBL-EBI
WormBase CE18998 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04912 Hypothetical protein W04E12.3 [Caenorhabditis elegans] ref|NP_507826.1| W04E12.3 [Caenorhabditis elegans] 4.0E-25
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507826.1 1 48-70
W04E12.3 1 48-70
Sequence
Target Sequence 
>C. ELEGANS:172258_X_AT
gaaggaagcccagtgtaatccacgcgaagaagaggaaaacgagttttcggatttgtctga
aaattctgaaaatcttcaaaatgacacggaaattgtggaaatgatgacgtcacggacttc
taaattttggctcattgctccgattttcattgcattcgtcttgtattttgctctttttga
g

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGGAAGCCCAGTGTAATCCACGC 633 333 30 Antisense
AGCCCAGTGTAATCCACGCGAAGAA 135 83 36 Antisense
GAAAACGAGTTTTCGGATTTGTCTG 557 347 64 Antisense
TGAAAATCTTCAAAATGACACGGAA 166 571 96 Antisense
TGATGACGTCACGGACTTCTAAATT 136 567 131 Antisense
GTCACGGACTTCTAAATTTTGGCTC 527 459 138 Antisense
AAATTTTGGCTCATTGCTCCGATTT 649 115 151 Antisense
GCTCCGATTTTCATTGCATTCGTCT 412 299 166 Antisense
GATTTTCATTGCATTCGTCTTGTAT 476 429 171 Antisense
TGCATTCGTCTTGTATTTTGCTCTT 459 579 180 Antisense
CGTCTTGTATTTTGCTCTTTTTGAG 9 247 186 Antisense
Sequence Source Affymetrix Proprietary Database