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[172257_x_at]

Description C37C3.3 /REP_DB=WormBase Gene ID /WP=CE06928 /TR=Q22916 /GB=AAC25860.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 34      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 18.9
(-3)
A 		54.8
(1.7)
P 		31.2
(-1.4)
A 		64.5
(3)
A 		46
B 38.3
(-0.5)
P 		52.3
(2.1)
A 		25.3
(-3)
A 		56.9
(3)
P 		32
C 26.3
(-3)
A 		48
(1.4)
A 		55.9
(3)
M 		36.5
(-0.9)
A 		30
avr 27.8
(-3) 		51.7
(2.8) 		37.5
(-0.7) 		52.6
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 53
(1.5)
A 		37.8
(-0.4)
P 		44.2
(0.4)
A 		64.8
(3)
P 		17.7
(-3)
A 		53.4
(1.5)
P 		47
B 45.8
(2.8)
A 		47.2
(3)
A 		33.1
(1.1)
A 		26.8
(0.3)
A 		43.5
(2.5)
A 		2.4
(-3)
A 		45
C 43
(-0.4)
P 		62.6
(1.4)
A 		14.5
(-3)
A 		80.3
(3)
A 		42.6
(-0.4)
A 		30.8
(-1.5)
A 		66
avr 47.3
(0.9) 		49.2
(1.3) 		30.6
(-2.6) 		57.3
(3) 		34.6
(-1.8) 		28.9
(-3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 6.9
(-3)
A 		11.9
(3)
P 		8.2
(-1.4)
A 		9.4
(0)
A 		5
B 12.2
(2.4)
P 		12.9
(3)
A 		5.9
(-3)
A 		12.1
(2.3)
P 		7
C 8.7
(-1.9)
A 		13.8
(0.4)
A 		19.5
(3)
M 		6.2
(-3)
A 		13
avr 9.3
(-2.8) 		12.9
(3) 		11.2
(0.2) 		9.2
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 9.8
(-0.6)
A 		13.5
(1.4)
P 		9.6
(-0.7)
A 		16.4
(3)
P 		5.4
(-3)
A 		13
(1.1)
P 		11
B 15.9
(2.4)
A 		15.7
(2.3)
A 		8
(-0.5)
A 		7.1
(-0.8)
A 		17.7
(3)
A 		0.9
(-3)
A 		17
C 15.9
(1.8)
P 		19.1
(3)
A 		3.7
(-3)
A 		16.2
(1.9)
A 		13.8
(0.9)
A 		10.3
(-0.4)
A 		15
avr 13.9
(1.5) 		16.1
(3) 		7.1
(-3) 		13.2
(1.1) 		12.3
(0.5) 		8.1
(-2.3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172257_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11907
Sequence Type Exemplar sequence
Representative Public ID C37C3.3 NCBI
Target Description C37C3.3 /REP_DB=WormBase Gene ID /WP=CE06928 /TR=Q22916 /GB=AAC25860.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072621(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072621 NCBI Caenorhabditis elegans C37C3.3 (C37C3.3) mRNA, complete cds. 11/11 None
SNAP00000006079 ENSEMBL cdna:SNAP chromosome:CEL140:V:7852576:7853621:1 11/11 None
GENEFINDER00000006093 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7852576:7853621:1 11/11 None
C37C3.3 ENSEMBL cdna:known chromosome:CEL140:V:7852432:7853621:1 gene:C37C3.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_071835 4/11 Cross Hyb Matching Probes A 
SNAP00000010093 4/11 Cross Hyb Matching Probes None
GENEFINDER00000010110 4/11 Cross Hyb Matching Probes None
Y61A9LA.5 4/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7852432-7853622(+) 100.0 100.0
chrV:4555726-4556928(+) 95.86 95.86
Public Domain and Genome References
Gene Title
Ensembl C37C3.3
Entrez Gene 183288 Entrez gene
SwissProt Q22916 EMBL-EBI
WormBase CE06928 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC25860 Hypothetical protein C37C3.3 [Caenorhabditis elegans] ref|NP_505022.1| C37C3.3 [Caenorhabditis elegans] 1.0E-146
blast AAC25860 Hypothetical protein C37C3.3 [Caenorhabditis elegans] ref|NP_505022.1| C37C3.3 [Caenorhabditis elegans] 1.0E-114
blast AAC25860 Hypothetical protein C37C3.3 [Caenorhabditis elegans] ref|NP_505022.1| C37C3.3 [Caenorhabditis elegans] 1.0E-112
blast AAA68771 Hypothetical protein C56C10.3 [Caenorhabditis elegans] ref|NP_495337.1| Temporarily Assigned Gene name family member (tag-309) [Caenorhabditis elegans] 1.0E-88
blast AAA68771 Hypothetical protein C56C10.3 [Caenorhabditis elegans] ref|NP_495337.1| Temporarily Assigned Gene name family member (tag-309) [Caenorhabditis elegans] 5.0E-88
blast AAA68771 Hypothetical protein C56C10.3 [Caenorhabditis elegans] ref|NP_495337.1| Temporarily Assigned Gene name family member (tag-309) [Caenorhabditis elegans] 3.0E-85
blast CAE60666 Hypothetical protein CBG04319 [Caenorhabditis briggsae] 2.0E-82
Protein Domains
Database ID Description E-Value
Pfam IPR005024 EMBL-EBI Snf7 2.2E-63
Pfam IPR005024 EMBL-EBI Snf7 1.1E-60
Pfam IPR005024 EMBL-EBI Snf7 1.0E-5
Pfam IPR005024 EMBL-EBI Snf7 5.9E-50
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505022.1 1 15-37
C37C3.3 1 15-37
Sequence
Target Sequence 
>C. ELEGANS:172257_X_AT
gatgcaagaagctccgattactccacaagaatctattcaaaaacttcgggaaacagaaga
tattcttgagaagaaacaagaattcttggagaaaaaaattgacgacgtaagaaagcaaaa
tgccgtgaagtatggaacaaaaaacaagcggatggctctccagtgtttgagtaggaagaa
agctttcgagaagcagttgatccatattgacggagttttggctactctcgaacatcagag
agaaaccctcgaaaatgcttcaacgaatgctgaagttctcacggttatgaaacttgctag
cgatgcgttgaaagcggttcataataacatggatagcgaccaagttcgtgatatgatgga
taacatagatgaacaacgagaagtggcgaaggaaatcgcggatgctatttcaaaccctgg
ctttaacaacgcaattgacgaggccgatttgctgcgcgagttggtggatcttgaacagga
agcacttgacaaagatttgcttgatgcgagagctcccccagtcacgcttccggatactcc
caatattgcacttccagcctccagaccgagagctaaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGCAAGAAGCTCCGATTACTCCA 37 413 189 Antisense
AAACAAGCGGATGGCTCTCCAGTGT 421 129 330 Antisense
GTTTTGGCTACTCTCGAACATCAGA 224 447 403 Antisense
ATGCTGAAGTTCTCACGGTTATGAA 409 41 455 Antisense
GAAACTTGCTAGCGATGCGTTGAAA 633 355 477 Antisense
ATCGCGGATGCTATTTCAAACCCTG 431 37 583 Antisense
CAAACCCTGGCTTTAACAACGCAAT 392 191 599 Antisense
ATTTGCTGCGCGAGTTGGTGGATCT 432 17 635 Antisense
GATTTGCTTGATGCGAGAGCTCCCC 262 427 682 Antisense
GGATACTCCCAATATTGCACTTCCA 654 509 720 Antisense
CCAGCCTCCAGACCGAGAGCTAAAG 4 273 742 Antisense
Sequence Source Affymetrix Proprietary Database