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[172256_x_at]

Description F59H6.7 /REP_DB=WormBase Gene ID /WP=CE20913 /TR=Q9N5Q2 /GB=AAF39851.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 68      4grp_total > 11      6grp_cgc > 38      6grp_cgc_sub > Da      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 146
1 2 3 4 range
A 108.4
(-0.5)
A 		84.8
(-1.6)
A 		55.5
(-3)
A 		180.2
(3)
P 		125
B 46.1
(-1.8)
A 		42
(-2.3)
A 		36.3
(-3)
A 		83.7
(3)
A 		47
C 34.5
(-3)
A 		61.9
(-1.8)
A 		53
(-2.2)
A 		167.3
(3)
A 		133
avr 63
(-2.1) 		62.9
(-2.1) 		48.3
(-3) 		143.7
(3) 		95

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 54.5
(-3)
A 		56.3
(-2.6)
A 		65.7
(-0.3)
A 		72.7
(1.4)
A 		60.4
(-1.6)
A 		79.6
(3)
A 		25
B 79.1
(1.7)
A 		63.4
(-0.2)
A 		40.9
(-3)
A 		50
(-1.9)
A 		54.3
(-1.3)
A 		89.6
(3)
A 		49
C 55.5
(-1.4)
A 		37.2
(-3)
A 		68.9
(-0.2)
A 		44.5
(-2.4)
A 		58.6
(-1.1)
A 		104.8
(3)
M 		68
avr 63
(-1.4) 		52.3
(-3) 		58.5
(-2) 		55.7
(-2.5) 		57.8
(-2.2) 		91.3
(3) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 39.5
(3)
A 		18.4
(-2.1)
A 		14.5
(-3)
A 		26.4
(-0.1)
P 		25
B 14.7
(1)
A 		10.4
(-1.7)
A 		8.4
(-3)
A 		17.8
(3)
A 		9
C 11.4
(-3)
A 		17.8
(-0.7)
A 		18.5
(-0.5)
A 		28.2
(3)
A 		17
avr 21.9
(1.7) 		15.5
(-2) 		13.8
(-3) 		24.1
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 10
(-3)
A 		20
(3)
A 		14.3
(-0.4)
A 		18.4
(2)
A 		18.2
(1.9)
A 		19.4
(2.6)
A 		10
B 27.5
(1.5)
A 		21.1
(-0.1)
A 		9.9
(-3)
A 		13.2
(-2.2)
A 		22.1
(0.1)
A 		33.4
(3)
A 		24
C 20.6
(-0.3)
A 		11.4
(-2.4)
A 		17.5
(-1)
A 		8.9
(-3)
A 		19
(-0.7)
A 		35.1
(3)
M 		26
avr 19.4
(-0.8) 		17.5
(-1.5) 		13.9
(-2.8) 		13.5
(-3) 		19.8
(-0.6) 		29.3
(3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172256_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4324
Sequence Type Exemplar sequence
Representative Public ID F59H6.7 NCBI
Target Description F59H6.7 /REP_DB=WormBase Gene ID /WP=CE20913 /TR=Q9N5Q2 /GB=AAF39851.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061753(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061753 NCBI Caenorhabditis elegans CYclin A family member (cya-2) (cya-2) mRNA, complete cds. 11/11 None
GENEFINDER00000002437 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2022879:2028799:-1 10/11 None
F59H6.7 ENSEMBL cdna:known chromosome:CEL140:II:2022879:2023303:-1 gene:F59H6.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_077024 8/11 Cross Hyb Matching Probes A 
SNAP00000017785 1/11 Cross Hyb Matching Probes None
GENEFINDER00000012400 7/11 Cross Hyb Matching Probes None
SNAP00000012383 8/11 Cross Hyb Matching Probes None
ZK1225.7 1/11 Cross Hyb Matching Probes None
F08F1.9 8/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2022877-2023302(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol cya-2
Ensembl F59H6.7
Entrez Gene 186646 Entrez gene
SwissProt Q7Z134 EMBL-EBI
WormBase CE20913 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39857 Hypothetical protein F59H6.9 [Caenorhabditis elegans] ref|NP_494156.1| F59H6.9 [Caenorhabditis elegans] 1.0E-169
blast AAF39856 Hypothetical protein F59H6.8 [Caenorhabditis elegans] ref|NP_494155.1| F59H6.8 [Caenorhabditis elegans] 1.0E-143
blast AAB94977 Hypothetical protein F52C6.11 [Caenorhabditis elegans] ref|NP_494125.2| F52C6.11 [Caenorhabditis elegans] 1.0E-100
blast AAP68938 Cyclin a protein 2 [Caenorhabditis elegans] ref|NP_494154.1| CYclin A family member (cya-2) [Caenorhabditis elegans] 3.0E-65
blast AAB71309 Hypothetical protein F08F1.9 [Caenorhabditis elegans] ref|NP_509425.1| F08F1.9 [Caenorhabditis elegans] 1.0E-51
blast CAA82372 Hypothetical protein ZK507.6 [Caenorhabditis elegans] ref|NP_499018.1| ZK507.6 [Caenorhabditis elegans] sp|P34638|CCNA1_CAEEL G2/mitotic-specific cyclin A1 gb|AAA84393.1| cyclin A 1.0E-22
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 5.5E-28
Pfam IPR002083 EMBL-EBI MATH 1.1E-19
Pfam IPR000210 EMBL-EBI BTB/POZ domain 8.1E-36
Pfam IPR000210 EMBL-EBI BTB/POZ domain 2.8E-31
Pfam IPR006671 EMBL-EBI Cyclin, N-terminal domain 3.2E-9
Pfam IPR006671 EMBL-EBI Cyclin, N-terminal domain 6.5E-15
Sequence
Target Sequence 
>C. ELEGANS:172256_X_AT
tcgattggttcagcgatgccgtgagagagtacatttcccgaaaggaagcagttcatctcg
cggcgagcctcgtggatcgtgctcttccaatgttcaacattgataaaatgcgatttcaac
tggttggaatcacgtcgatgaggatcgcagtaaaatacgaggaaatctttccacctatcc
tatcgaatacccgacattcttttgatggagcgattctttattggaaagttcgacttcatc
gtcgcaatgcccacaccatcttggatcggatcatgctttgcacagagaatgaactcggcg
tttgccgcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGATTGGTTCAGCGATGCCGTGAG 627 603 29 Antisense
GCCGTGAGAGAGTACATTTCCCGAA 326 283 46 Antisense
GAAAGGAAGCAGTTCATCTCGCGGC 449 361 68 Antisense
ATCGTGCTCTTCCAATGTTCAACAT 588 35 104 Antisense
TCAACTGGTTGGAATCACGTCGATG 447 631 144 Antisense
TTTCCACCTATCCTATCGAATACCC 24 669 196 Antisense
ATACCCGACATTCTTTTGATGGAGC 324 23 215 Antisense
GTTCGACTTCATCGTCGCAATGCCC 84 443 256 Antisense
CCCACACCATCTTGGATCGGATCAT 260 259 278 Antisense
TTGGATCGGATCATGCTTTGCACAG 431 709 289 Antisense
AGAATGAACTCGGCGTTTGCCGCCA 584 75 314 Antisense
Sequence Source Affymetrix Proprietary Database