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[172254_x_at]

Description Y43C5A.1 /REP_DB=WormBase Gene ID /WP=CE19150 /TR=Q9XXF2 /GB=CAA19502.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 32      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 29.7
(-3)
A 		42.2
(-1.8)
A 		90.6
(3)
A 		84.1
(2.4)
A 		61
B 47.4
(-0.7)
A 		38.2
(-1.6)
A 		87.6
(3)
A 		22.5
(-3)
A 		65
C 54.9
(-0)
A 		53.1
(-0.4)
A 		40.7
(-3)
A 		69.5
(3)
A 		29
avr 44
(-3) 		44.5
(-2.9) 		73
(3) 		58.7
(0) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 667
1 2 3 4 5 6 range
A 98.9
(-2.9)
A 		87.6
(-3)
P 		197.4
(-1.6)
P 		170.8
(-1.9)
P 		400.6
(1)
P 		558.8
(3)
P 		471
B 18.7
(-3)
A 		116.7
(-2)
A 		141.2
(-1.7)
P 		135.1
(-1.8)
P 		525.6
(2.4)
P 		583.3
(3)
P 		565
C 83
(-3)
A 		129.2
(-2.5)
P 		97
(-2.9)
P 		147.7
(-2.4)
P 		440.1
(0.6)
P 		686.1
(3)
P 		603
avr 66.9
(-3) 		111.2
(-2.5) 		145.2
(-2.1) 		151.2
(-2.1) 		455.4
(1.3) 		609.4
(3) 		543
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 10.8
(-2.3)
A 		9.2
(-3)
A 		23.7
(3)
A 		12.3
(-1.7)
A 		15
B 15.1
(1)
A 		9.4
(-1.2)
A 		20.3
(3)
A 		4.8
(-3)
A 		16
C 18.2
(3)
A 		15.3
(0.3)
A 		14.2
(-0.7)
A 		11.7
(-3)
A 		7
avr 14.7
(0.1) 		11.3
(-2) 		19.4
(3) 		9.6
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 223
1 2 3 4 5 6 range
A 18.2
(-3)
A 		31.2
(-2.3)
P 		43
(-1.7)
P 		43.3
(-1.7)
P 		120.9
(2.2)
P 		136
(3)
P 		118
B 6.5
(-3)
A 		38.8
(-2.1)
A 		34.3
(-2.2)
P 		35.8
(-2.2)
P 		213.5
(2.9)
P 		217.5
(3)
P 		211
C 30.8
(-2.8)
A 		39.4
(-2.6)
P 		24.7
(-3)
P 		29.7
(-2.9)
P 		142.4
(0.4)
P 		229.7
(3)
P 		205
avr 18.5
(-3) 		36.5
(-2.4) 		34
(-2.5) 		36.3
(-2.4) 		158.9
(1.8) 		194.4
(3) 		176
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172254_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9704
Sequence Type Exemplar sequence
Representative Public ID Y43C5A.1 NCBI
Target Description Y43C5A.1 /REP_DB=WormBase Gene ID /WP=CE19150 /TR=Q9XXF2 /GB=CAA19502.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069481(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069481 NCBI Caenorhabditis elegans Y43C5A.1 (Y43C5A.1) mRNA, complete cds. 11/11 None
SNAP00000044399 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10268946:10269158:-1 11/11 None
GENEFINDER00000044409 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10268946:10269158:-1 11/11 None
Y43C5A.1 ENSEMBL cdna:known chromosome:CEL140:IV:10268946:10269158:-1 gene:Y43C5A.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_059358 2/11 Cross Hyb Matching Probes A 
NM_069362 1/11 Cross Hyb Matching Probes A 
NM_062470 1/11 Cross Hyb Matching Probes A 
SNAP00000003129 2/11 Cross Hyb Matching Probes None
GENEFINDER00000003134 2/11 Cross Hyb Matching Probes None
SNAP00000040845 1/11 Cross Hyb Matching Probes None
GENEFINDER00000040847 1/11 Cross Hyb Matching Probes None
SNAP00000004248 1/11 Cross Hyb Matching Probes None
GENEFINDER00000004271 1/11 Cross Hyb Matching Probes None
ZK484.8.2 2/11 Cross Hyb Matching Probes A 
T23B7.1 1/11 Cross Hyb Matching Probes A 
K07F5.5.2 1/11 Cross Hyb Matching Probes A 
K07F5.5.1 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10268951-10269164(-) 100.0 100.0
chrI:6105713-6105926(-) 90.61 90.61
Public Domain and Genome References
Gene Title
Ensembl Y43C5A.1
Entrez Gene 177910 Entrez gene
SwissProt Q9XXF2 EMBL-EBI
WormBase CE19150 Wormbase
Functional Annotations
Protein Domains
Database ID Description E-Value
Pfam IPR008498 EMBL-EBI Caenorhabditis elegans protein of unknown function DUF780 5.9E-49
Sequence
Target Sequence 
>C. ELEGANS:172254_X_AT
atggcggacaagtcggcatacatgggtgctggtggatatggatcgggctacatggggtcc
aacgcctcatcgtcgggatatgcccgcgaggattatgcgcaaggaggaaatggcggagga
caacagcagaatcaaggatctggaggaaacaccaacccaggagggcaggccttcaaggcc
c

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCGGACAAGTCGGCATACATGG 594 53 13 Antisense
GTCGGCATACATGGGTGCTGGTGGA 48 467 24 Antisense
GGTGCTGGTGGATATGGATCGGGCT 602 501 37 Antisense
TGGATCGGGCTACATGGGGTCCAAC 380 549 51 Antisense
CGCCTCATCGTCGGGATATGCCCGC 634 257 75 Antisense
TATGCCCGCGAGGATTATGCGCAAG 73 657 91 Antisense
GGAGGAAATGGCGGAGGACAACAGC 445 513 115 Antisense
GGCGGAGGACAACAGCAGAATCAAG 161 541 124 Antisense
AGGATCTGGAGGAAACACCAACCCA 96 57 147 Antisense
AACCCAGGAGGGCAGGCCTTCAAGG 216 1 166 Antisense
CCAGGAGGGCAGGCCTTCAAGGCCC 137 271 169 Antisense
Sequence Source Affymetrix Proprietary Database