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[172251_x_at]

Description C04C3.4 /REP_DB=WormBase Gene ID /WP=CE16810 /TR=O44449 /GB=AAB92025.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 88      4grp_high_8_8 > 14      6grp_total > 89      4grp_total > 02      6grp_high1_sub > Da      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 253
1 2 3 4 range
A 75.2
(-1.8)
A 		23.9
(-3)
A 		33.6
(-2.8)
A 		276.5
(3)
P 		253
B 56
(-3)
P 		77
(-1.5)
P 		73.3
(-1.8)
A 		140.2
(3)
P 		84
C 49.9
(-3)
P 		64.1
(-2.4)
A 		57.2
(-2.7)
P 		192.9
(3)
P 		143
avr 60.4
(-2.8) 		55
(-3) 		54.7
(-3) 		203.2
(3) 		149

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 179
1 2 3 4 5 6 range
A 102
(-1.3)
A 		63.5
(-3)
P 		103.6
(-1.2)
P 		82.2
(-2.2)
P 		161
(1.4)
P 		195.7
(3)
P 		132
B 103.9
(-1.3)
P 		54.3
(-3)
P 		104.3
(-1.3)
P 		98.8
(-1.5)
P 		225.3
(2.7)
P 		232.9
(3)
P 		179
C 79.7
(-2.2)
P 		184.2
(2.2)
P 		81
(-2.2)
A 		62
(-3)
M 		155.1
(1)
P 		202.7
(3)
P 		141
avr 95.2
(-2.3) 		100.7
(-2.1) 		96.3
(-2.3) 		81
(-3) 		180.5
(1.6) 		210.4
(3) 		129
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 27.4
(0.8)
A 		5.2
(-3)
A 		8.8
(-2.4)
A 		40.5
(3)
P 		35
B 17.9
(-2.6)
P 		19
(-2.1)
P 		17
(-3)
A 		29.9
(3)
P 		13
C 16.5
(-3)
P 		18.4
(-2.3)
A 		19.9
(-1.7)
P 		32.5
(3)
P 		16
avr 20.6
(-1.1) 		14.2
(-3) 		15.2
(-2.7) 		34.3
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 18.8
(-3)
A 		22.6
(-2.2)
P 		22.6
(-2.2)
P 		20.8
(-2.6)
P 		48.6
(3)
P 		47.7
(2.8)
P 		30
B 36.2
(-1.5)
P 		18.1
(-3)
P 		25.3
(-2.4)
P 		26.2
(-2.3)
P 		91.5
(3)
P 		86.8
(2.6)
P 		73
C 29.5
(-1.2)
P 		56.2
(1.7)
P 		20.6
(-2.1)
A 		12.5
(-3)
M 		50.2
(1.1)
P 		67.9
(3)
P 		55
avr 28.2
(-1.9) 		32.3
(-1.4) 		22.8
(-2.6) 		19.8
(-3) 		63.4
(2.5) 		67.5
(3) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172251_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10820
Sequence Type Exemplar sequence
Representative Public ID C04C3.4 NCBI
Target Description C04C3.4 /REP_DB=WormBase Gene ID /WP=CE16810 /TR=O44449 /GB=AAB92025.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067937(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067937 NCBI Caenorhabditis elegans C04C3.4 (C04C3.4) mRNA, complete cds. 11/11 None
C04C3.4 ENSEMBL cdna:known chromosome:CEL140:IV:3394363:3394642:1 gene:C04C3.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_064731 6/11 Cross Hyb Matching Probes A 
NM_078190 7/11 Cross Hyb Matching Probes A 
NM_073820 5/11 Cross Hyb Matching Probes A 
NM_071600 2/11 Cross Hyb Matching Probes A 
NM_066279 6/11 Cross Hyb Matching Probes A 
GENEFINDER00000019308 3/11 Cross Hyb Matching Probes None
SNAP00000019301 3/11 Cross Hyb Matching Probes None
SNAP00000002425 5/11 Cross Hyb Matching Probes None
GENEFINDER00000029924 3/11 Cross Hyb Matching Probes None
SNAP00000029922 3/11 Cross Hyb Matching Probes None
GENEFINDER00000017793 6/11 Cross Hyb Matching Probes None
SNAP00000017785 7/11 Cross Hyb Matching Probes None
SNAP00000029927 8/11 Cross Hyb Matching Probes None
SNAP00000014612 4/11 Cross Hyb Matching Probes None
GENEFINDER00000014619 5/11 Cross Hyb Matching Probes None
GENEFINDER00000020019 5/11 Cross Hyb Matching Probes None
SNAP00000027433 5/11 Cross Hyb Matching Probes None
SNAP00000038617 4/11 Cross Hyb Matching Probes None
GENEFINDER00000038626 4/11 Cross Hyb Matching Probes None
SNAP00000010126 3/11 Cross Hyb Matching Probes None
GENEFINDER00000010128 3/11 Cross Hyb Matching Probes None
F27D4.3 1/11 Cross Hyb Matching Probes None
W02A11.6 3/11 Cross Hyb Matching Probes None
W05G11.2 6/11 Cross Hyb Matching Probes A 
C03B8.2 6/11 Cross Hyb Matching Probes A 
T24A6.1 2/11 Cross Hyb Matching Probes A 
T07F10.5 5/11 Cross Hyb Matching Probes A 
ZK678.3 7/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12762860-12763141(+) 96.11 96.11
chrIII:58456-58724(+) 97.78 97.78
chrIII:7716086-7716367(+) 96.67 96.67
chrIV:3394368-3394648(+) 100.0 100.0
chrV:12868866-12869138(+) 97.22 97.22
chrV:3559270-3559539(+) 93.33 93.33
chrX:8148364-8148640(+) 87.22 93.33
chrII:2018856-2019135(-) 98.33 98.33
chrV:12376221-12376501(-) 95.56 95.56
chrX:8409695-8409974(-) 97.78 97.78
chrX:15748400-15748679(-) 97.22 97.22
chrX:4239609-4239889(-) 96.11 96.11
Public Domain and Genome References
Gene Title
Ensembl C04C3.4
Entrez Gene 182196 Entrez gene
SwissProt O44449 EMBL-EBI
WormBase CE16810 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB92025 Hypothetical protein C04C3.4 [Caenorhabditis elegans] ref|NP_500338.1| C04C3.4 [Caenorhabditis elegans] 2.0E-28
blast CAB01905 Hypothetical protein ZK678.3 [Caenorhabditis elegans] ref|NP_510591.1| ZK678.3 [Caenorhabditis elegans] 2.0E-25
blast CAB01244 Hypothetical protein T07F10.5 [Caenorhabditis elegans] ref|NP_506221.1| T07F10.5 [Caenorhabditis elegans] 2.0E-25
Sequence
Target Sequence 
>C. ELEGANS:172251_X_AT
tgcggaatgatgtcaaactcctcgagctgtcgccgatagatgctcattttctacgttacc
gcccatctgatgctgctcagaatcacagaatcaacaattcgaccaaatttattttttcat
ttttcatgttcaataaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCGGAATGATGTCAAACTCCTCGA 220 581 14 Antisense
ATGATGTCAAACTCCTCGAGCTGTC 107 47 20 Antisense
CTCGAGCTGTCGCCGATAGATGCTC 670 231 34 Antisense
GCTGTCGCCGATAGATGCTCATTTT 484 295 39 Antisense
TAGATGCTCATTTTCTACGTTACCG 248 653 50 Antisense
CGCCCATCTGATGCTGCTCAGAATC 662 255 73 Antisense
GATGCTGCTCAGAATCACAGAATCA 599 413 82 Antisense
GAATCACAGAATCAACAATTCGACC 489 327 93 Antisense
GAATCAACAATTCGACCAAATTTAT 254 327 101 Antisense
TTTATTTTTTCATTTTTCATGTTCA 238 675 121 Antisense
TTTTCATTTTTCATGTTCAATAAAC 130 677 127 Antisense
Sequence Source Affymetrix Proprietary Database