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[172250_x_at]

Description R09H3.2 /REP_DB=WormBase Gene ID /WP=CE07446 /TR=Q21886 /GB=AAB00612.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 18      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 2.1
(-3)
A 		5.8
(3)
A 		5.5
(2.5)
A 		3.4
(-0.9)
A 		4
B 0.9
(-3)
A 		6.7
(-2.4)
A 		3.6
(-2.7)
A 		60.5
(3)
A 		60
C 1.8
(-2.1)
A 		4.7
(2.3)
A 		1.2
(-3)
A 		5.2
(3)
A 		4
avr 1.6
(-3) 		5.7
(-1.9) 		3.4
(-2.5) 		23
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 6.3
(2.3)
A 		6.9
(3)
A 		2.5
(-2.3)
A 		3
(-1.7)
A 		1.9
(-3)
A 		3
(-1.7)
A 		5
B 3.8
(3)
A 		1.5
(-2.1)
A 		2.4
(-0.1)
A 		2.5
(0.1)
A 		1.1
(-3)
A 		1.4
(-2.3)
A 		3
C 1.8
(-2.9)
A 		3.7
(-2)
A 		5.7
(-1.2)
A 		15.2
(3)
A 		1.5
(-3)
A 		10.7
(1)
A 		14
avr 4
(-0.2) 		4
(-0.2) 		3.5
(-0.8) 		6.9
(3) 		1.5
(-3) 		5
(0.9) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 0.7
(-1.7)
A 		1.3
(2.3)
A 		1.4
(3)
A 		0.5
(-3)
A 		1
B 0.3
(-3)
A 		1.6
(-2.4)
A 		0.8
(-2.8)
A 		12.9
(3)
A 		13
C 0.6
(-1.8)
A 		1.4
(3)
A 		0.4
(-3)
A 		0.9
(0)
A 		1
avr 0.5
(-3) 		1.4
(-1.7) 		0.9
(-2.4) 		4.8
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 1.2
(-1.1)
A 		2.5
(3)
A 		0.6
(-3)
A 		0.8
(-2.4)
A 		0.6
(-3)
A 		0.7
(-2.7)
A 		2
B 1.3
(3)
A 		0.5
(-3)
A 		0.6
(-2.3)
A 		0.6
(-2.3)
A 		0.5
(-3)
A 		0.5
(-3)
A 		1
C 0.7
(-2.6)
A 		1.1
(-1.8)
A 		1.5
(-1.1)
A 		3.1
(2)
A 		0.5
(-3)
A 		3.6
(3)
A 		3
avr 1.1
(0.3) 		1.4
(1.9) 		0.9
(-0.8) 		1.5
(2.5) 		0.5
(-3) 		1.6
(3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172250_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18327
Sequence Type Exemplar sequence
Representative Public ID R09H3.2 NCBI
Target Description R09H3.2 /REP_DB=WormBase Gene ID /WP=CE07446 /TR=Q21886 /GB=AAB00612.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) R09H3.2
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
R09H3.2 R09H3.2 /REP_DB=WormBase Gene ID /WP=CE07446 /TR=Q21886 /GB=AAB00612.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1664849-1665020(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:172250_X_AT
ggcaaaatttcagccacgagccgaaacacctcaagaaataaccatcgaagaagctcaaaa
gcgagatcaaccagagataatagccccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCAAAATTTCAGCCACGAGCCGAA 614 533 15 Antisense
CAAAATTTCAGCCACGAGCCGAAAC 617 189 17 Antisense
AAATTTCAGCCACGAGCCGAAACAC 135 117 19 Antisense
CCACGAGCCGAAACACCTCAAGAAA 642 273 28 Antisense
ACGAGCCGAAACACCTCAAGAAATA 247 89 30 Antisense
GCCGAAACACCTCAAGAAATAACCA 465 281 34 Antisense
GAAACACCTCAAGAAATAACCATCG 546 355 37 Antisense
ACACCTCAAGAAATAACCATCGAAG 413 107 40 Antisense
GAAATAACCATCGAAGAAGCTCAAA 426 361 49 Antisense
GAAGCTCAAAAGCGAGATCAACCAG 76 343 64 Antisense
AGATCAACCAGAGATAATAGCCCCG 337 65 78 Antisense
Sequence Source Affymetrix Proprietary Database