[Home] | [Total List]

[172247_x_at]

Description F55C9.2 /REP_DB=WormBase Gene ID /WP=CE18734 /TR=Q9XUZ5 /GB=CAB04467.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 07      4grp_total > 18      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 0.6
(-2.9)
A 		10.3
(3)
A 		0.4
(-3)
A 		0.5
(-2.9)
A 		10
B 0.5
(-2.8)
A 		0.3
(-3)
A 		2.3
(-1.1)
A 		6.6
(3)
A 		6
C 0.2
(-3)
A 		0.4
(-2.9)
A 		0.1
(-3)
A 		20.3
(3)
A 		20
avr 0.4
(-3) 		3.7
(-0.7) 		0.9
(-2.7) 		9.1
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 6.5
(3)
A 		0.1
(-3)
A 		1.4
(-1.8)
A 		0.1
(-3)
A 		0.5
(-2.6)
A 		0.2
(-2.9)
A 		6
B 0.5
(-2.2)
A 		0.2
(-3)
A 		2.5
(3)
A 		0.4
(-2.5)
A 		0.2
(-3)
A 		0.5
(-2.2)
A 		2
C 0.1
(-3)
A 		1.5
(3)
A 		0.2
(-2.6)
A 		0.2
(-2.6)
A 		0.1
(-3)
A 		0.4
(-1.7)
A 		1
avr 2.4
(3) 		0.6
(-1.9) 		1.4
(0.3) 		0.2
(-3) 		0.3
(-2.7) 		0.4
(-2.5) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 0.2
(-2.7)
A 		2.2
(3)
A 		0.1
(-3)
A 		0.1
(-3)
A 		2
B 0.2
(-2.5)
A 		0.1
(-3)
A 		0.5
(-1.2)
A 		1.4
(3)
A 		1
C 0.1
(-2.8)
A 		0.1
(-2.8)
A 		0
(-3)
A 		3.4
(3)
A 		3
avr 0.2
(-3) 		0.8
(-0.4) 		0.2
(-3) 		1.6
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 1.2
(3)
A 		0
(-3)
A 		0.3
(-1.5)
A 		0
(-3)
A 		0.2
(-2)
A 		0
(-3)
A 		1
B 0.2
(-1.8)
A 		0.1
(-3)
A 		0.6
(3)
A 		0.1
(-3)
A 		0.1
(-3)
A 		0.2
(-1.8)
A 		1
C 0
(-3)
A 		0.4
(3)
A 		0
(-3)
A 		0
(-3)
A 		0
(-3)
A 		0.1
(-1.5)
A 		0
avr 0.5
(3) 		0.2
(-0.6) 		0.3
(0.6) 		0
(-3) 		0.1
(-1.8) 		0.1
(-1.8) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172247_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14739
Sequence Type Exemplar sequence
Representative Public ID F55C9.2 NCBI
Target Description F55C9.2 /REP_DB=WormBase Gene ID /WP=CE18734 /TR=Q9XUZ5 /GB=CAB04467.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) F55C9.2
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F55C9.2 F55C9.2 /REP_DB=WormBase Gene ID /WP=CE18734 /TR=Q9XUZ5 /GB=CAB04467.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19288388-19288513(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:172247_X_AT
atggacaacattaattcggcattttacaactttcaaataacgacgcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGACAACATTAATTCGGCATTTT 290 51 13 Antisense
GGACAACATTAATTCGGCATTTTAC 70 525 15 Antisense
GACAACATTAATTCGGCATTTTACA 5 365 16 Antisense
ACAACATTAATTCGGCATTTTACAA 44 111 17 Antisense
AACATTAATTCGGCATTTTACAACT 41 135 19 Antisense
TTAATTCGGCATTTTACAACTTTCA 236 681 23 Antisense
TAATTCGGCATTTTACAACTTTCAA 42 633 24 Antisense
ATTCGGCATTTTACAACTTTCAAAT 462 9 26 Antisense
TTCGGCATTTTACAACTTTCAAATA 181 695 27 Antisense
TCGGCATTTTACAACTTTCAAATAA 202 607 28 Antisense
TTACAACTTTCAAATAACGACGCAA 173 683 36 Antisense
Sequence Source Affymetrix Proprietary Database