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[172246_at]

Description T28C6.2 /REP_DB=WormBase Gene ID /WP=CE03747 /TR=Q22844 /GB=CAA90993.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 36      4grp_total > 12      6grp_cgc > 25      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 125.8
(-0.1)
A 		135.6
(0.8)
A 		94.4
(-3)
A 		159.9
(3)
A 		66
B 135.5
(-0)
A 		88.9
(-3)
A 		98.5
(-2.4)
A 		182.3
(3)
A 		93
C 126.2
(-2.6)
M 		130.7
(-2.2)
A 		120.2
(-3)
A 		201
(3)
A 		81
avr 129.2
(-1.1) 		118.4
(-1.9) 		104.4
(-3) 		181.1
(3) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 119
1 2 3 4 5 6 range
A 138.9
(2.2)
M 		154.1
(3)
P 		111.2
(0.8)
A 		104.7
(0.5)
A 		34.9
(-3)
A 		81.3
(-0.7)
A 		119
B 149.3
(3)
M 		137.7
(2)
A 		80.8
(-3)
A 		115
(-0)
A 		86.1
(-2.5)
A 		123.7
(0.8)
A 		69
C 148.1
(3)
P 		128.5
(-0.6)
A 		119.9
(-2.1)
A 		118.6
(-2.3)
M 		115
(-3)
P 		134.8
(0.6)
P 		33
avr 145.4
(3) 		140.1
(2.5) 		104
(-0.7) 		112.8
(0.1) 		78.7
(-3) 		113.3
(0.1) 		67
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 45.8
(3)
A 		29.4
(-1.4)
A 		24.7
(-2.7)
A 		23.4
(-3)
A 		22
B 43.2
(3)
A 		22
(-3)
A 		22.8
(-2.8)
A 		38.8
(1.8)
A 		21
C 41.8
(2.9)
M 		37.6
(-0.2)
A 		41.9
(3)
A 		33.9
(-3)
A 		8
avr 43.6
(3) 		29.7
(-3) 		29.8
(-3) 		32
(-2) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 25.6
(-1)
M 		54.8
(3)
P 		24.2
(-1.1)
A 		26.6
(-0.8)
A 		10.5
(-3)
A 		19.8
(-1.7)
A 		44
B 51.9
(3)
M 		45.8
(1.9)
A 		19.6
(-3)
A 		30.5
(-1)
A 		35
(-0.1)
A 		46.1
(1.9)
A 		32
C 54.9
(3)
P 		39.2
(-0)
A 		30.5
(-1.7)
A 		23.8
(-3)
M 		37.2
(-0.4)
P 		45.1
(1.1)
P 		31
avr 44.1
(2.3) 		46.6
(3) 		24.8
(-3) 		27
(-2.4) 		27.6
(-2.2) 		37
(0.4) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172246_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10254
Sequence Type Exemplar sequence
Representative Public ID T28C6.2 NCBI
Target Description T28C6.2 /REP_DB=WormBase Gene ID /WP=CE03747 /TR=Q22844 /GB=CAA90993.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069121(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069121 NCBI Caenorhabditis elegans T28C6.1 (T28C6.1) mRNA, complete cds. 11/11 None
T28C6.1 ENSEMBL cdna:known chromosome:CEL140:IV:8816317:8818507:1 gene:T28C6.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000005651 7/11 Cross Hyb Matching Probes None
GENEFINDER00000005666 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8818294-8818423(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol grsp-2
Ensembl T28C6.1
Entrez Gene 177693 Entrez gene
SwissProt Q22843 EMBL-EBI
WormBase CE35630 Wormbase
Sequence
Target Sequence 
>C. ELEGANS:172246_AT
acgtggatcccgctggggatggggacgcccatcatggggtggatggggacgtggatggta
aatgtcttcaatatcaactttaatttcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGTGGATCCCGCTGGGGATGGGGA 383 91 19 Antisense
TGGATCCCGCTGGGGATGGGGACGC 536 549 22 Antisense
CCCGCTGGGGATGGGGACGCCCATC 289 259 27 Antisense
GGGGATGGGGACGCCCATCATGGGG 660 373 33 Antisense
ATGGGGACGCCCATCATGGGGTGGA 139 49 37 Antisense
GGGACGCCCATCATGGGGTGGATGG 340 495 40 Antisense
GACGCCCATCATGGGGTGGATGGGG 6 379 42 Antisense
GTGGATGGGGACGTGGATGGTAAAT 95 489 57 Antisense
GGGACGTGGATGGTAAATGTCTTCA 643 493 64 Antisense
ATGGTAAATGTCTTCAATATCAACT 272 51 73 Antisense
CTTCAATATCAACTTTAATTTCAAA 287 219 84 Antisense
Sequence Source Affymetrix Proprietary Database