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[172245_x_at]

Description K07F5.5 /REP_DB=WormBase Gene ID /WP=CE06120 /TR=Q21293 /GB=CAA94279.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 11      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 8.4
(-3)
A 		32.3
(3)
A 		9.6
(-2.7)
A 		31.5
(2.8)
A 		24
B 33.1
(-0.3)
A 		6.7
(-3)
A 		10.1
(-2.6)
A 		64.7
(3)
A 		58
C 21.5
(-2.6)
A 		16.2
(-2.9)
A 		15.2
(-3)
A 		107.7
(3)
A 		93
avr 21
(-2) 		18.4
(-2.3) 		11.6
(-3) 		68
(3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1288
1 2 3 4 5 6 range
A 11.1
(-3)
A 		17.9
(-3)
A 		46.8
(-2.8)
A 		194.1
(-2.1)
P 		673
(0.1)
P 		1296.7
(3)
P 		1286
B 8.5
(-3)
A 		14.6
(-3)
A 		16.2
(-3)
A 		111.6
(-2.3)
A 		819.8
(2.1)
P 		957.5
(3)
P 		949
C 15.8
(-3)
A 		53.1
(-2.8)
A 		48.5
(-2.8)
A 		188.6
(-2.1)
P 		783.2
(1.1)
P 		1148.6
(3)
P 		1133
avr 11.8
(-3) 		28.5
(-2.9) 		37.2
(-2.9) 		164.8
(-2.2) 		758.7
(1) 		1134.3
(3) 		1123
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 3.1
(-2.2)
A 		7
(3)
A 		2.5
(-3)
A 		4.6
(-0.2)
A 		5
B 10.6
(1.4)
A 		1.7
(-3)
A 		2.3
(-2.7)
A 		13.8
(3)
A 		12
C 7.1
(-1.9)
A 		4.7
(-3)
A 		5.3
(-2.7)
A 		18.2
(3)
A 		14
avr 6.9
(-0.6) 		4.5
(-2.3) 		3.4
(-3) 		12.2
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 383
1 2 3 4 5 6 range
A 2
(-3)
A 		6.4
(-2.9)
A 		10.2
(-2.8)
A 		49.2
(-2.1)
P 		203.1
(0.8)
P 		315.7
(3)
P 		314
B 3
(-3)
A 		4.9
(-3)
A 		3.9
(-3)
A 		29.6
(-2.5)
A 		333.1
(2.6)
P 		357.1
(3)
P 		354
C 5.9
(-3)
A 		16.2
(-2.8)
A 		12.3
(-2.9)
A 		37.9
(-2.5)
P 		253.4
(0.9)
P 		384.5
(3)
P 		379
avr 3.6
(-3) 		9.2
(-2.9) 		8.8
(-2.9) 		38.9
(-2.4) 		263.2
(1.5) 		352.4
(3) 		349
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172245_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8718
Sequence Type Exemplar sequence
Representative Public ID K07F5.5 NCBI
Target Description K07F5.5 /REP_DB=WormBase Gene ID /WP=CE06120 /TR=Q21293 /GB=CAA94279.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069362(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069362 NCBI Caenorhabditis elegans K07F5.5 (K07F5.5) mRNA, complete cds. 11/11 None
SNAP00000004248 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9844033:9844245:1 11/11 None
GENEFINDER00000004271 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9844033:9844245:1 11/11 None
K07F5.5.2 ENSEMBL cdna:known chromosome:CEL140:IV:9844033:9844590:1 gene:K07F5.5 11/11 None
K07F5.5.1 ENSEMBL cdna:known chromosome:CEL140:IV:9844033:9844590:1 gene:K07F5.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_059358 1/11 Cross Hyb Matching Probes A 
NM_069481 1/11 Cross Hyb Matching Probes A 
NM_068329 2/11 Cross Hyb Matching Probes A 
NM_062474 1/11 Cross Hyb Matching Probes A 
SNAP00000003129 1/11 Cross Hyb Matching Probes None
GENEFINDER00000003134 1/11 Cross Hyb Matching Probes None
SNAP00000005480 1/11 Cross Hyb Matching Probes None
GENEFINDER00000005501 1/11 Cross Hyb Matching Probes None
SNAP00000024206 2/11 Cross Hyb Matching Probes None
SNAP00000024208 2/11 Cross Hyb Matching Probes None
GENEFINDER00000024211 2/11 Cross Hyb Matching Probes None
GENEFINDER00000024214 2/11 Cross Hyb Matching Probes None
SNAP00000044399 1/11 Cross Hyb Matching Probes None
GENEFINDER00000044409 1/11 Cross Hyb Matching Probes None
ZK484.8.2 1/11 Cross Hyb Matching Probes A 
F11G11.8 1/11 Cross Hyb Matching Probes None
C24D10.7 2/11 Cross Hyb Matching Probes A 
Y43C5A.1 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9844038-9844251(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K07F5.5
Entrez Gene 177831 Entrez gene
WormBase CE06120 Wormbase
Functional Annotations
Protein Domains
Database ID Description E-Value
Pfam IPR008498 EMBL-EBI Caenorhabditis elegans protein of unknown function DUF780 1.9E-50
Sequence
Target Sequence 
>C. ELEGANS:172245_X_AT
atggcggacaagtcggcttacatgggcgctggtggctatggatccggatatatgggatcc
aacgcctcatcgtcgggatatgcccgcgaagattatgcccaaggaggaaatggtggagga
cagcagcaaaaccagggatctggaggaaacaccaacccgggaggacaagtcttcaaggcc
cgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCGGACAAGTCGGCTTACATGG 597 53 13 Antisense
TTACATGGGCGCTGGTGGCTATGGA 448 683 30 Antisense
GGTGGCTATGGATCCGGATATATGG 489 497 43 Antisense
GATATATGGGATCCAACGCCTCATC 506 425 59 Antisense
CGCCTCATCGTCGGGATATGCCCGC 635 257 75 Antisense
ATGCCCGCGAAGATTATGCCCAAGG 126 41 92 Antisense
GGAAATGGTGGAGGACAGCAGCAAA 420 527 118 Antisense
AGGACAGCAGCAAAACCAGGGATCT 37 55 129 Antisense
GGATCTGGAGGAAACACCAACCCGG 106 513 148 Antisense
CAACCCGGGAGGACAAGTCTTCAAG 207 187 165 Antisense
GGGAGGACAAGTCTTCAAGGCCCGT 395 375 171 Antisense
Sequence Source Affymetrix Proprietary Database