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[172244_x_at]

Description C11E4.5 /REP_DB=WormBase Gene ID /WP=CE08105 /TR=Q93202 /GB=CAB02657.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1294
1 2 3 4 range
A 245.5
(-2.7)
A 		221.3
(-2.9)
A 		199.7
(-3)
A 		1182.8
(3)
P 		983
B 386.6
(0)
M 		223.9
(-2.8)
A 		211.7
(-3)
A 		561.1
(3)
P 		349
C 275.9
(-2.3)
A 		148.3
(-2.9)
A 		121.5
(-3)
M 		1415.6
(3)
P 		1294
avr 302.7
(-2.1) 		197.8
(-2.9) 		177.6
(-3) 		1053.2
(3) 		876

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 453
1 2 3 4 5 6 range
A 169.4
(-1.3)
A 		180.7
(-1.1)
A 		393.4
(3)
P 		83.1
(-3)
A 		277.4
(0.8)
A 		98.7
(-2.7)
P 		310
B 229.4
(0.3)
P 		285.4
(1.5)
A 		350.4
(3)
A 		86.2
(-3)
A 		217.8
(-0)
P 		225
(0.2)
P 		264
C 95.7
(-3)
A 		536.3
(3)
P 		122.1
(-2.6)
A 		150.1
(-2.3)
A 		129.3
(-2.5)
M 		164.8
(-2.1)
A 		441
avr 164.8
(-1.5) 		334.1
(3) 		288.6
(1.8) 		106.5
(-3) 		208.2
(-0.3) 		162.8
(-1.5) 		228
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 196
1 2 3 4 range
A 89.4
(-1)
A 		48
(-3)
A 		52.2
(-2.8)
A 		173.1
(3)
P 		125
B 123.3
(3)
M 		55.3
(-2.5)
A 		49
(-3)
A 		119.6
(2.7)
P 		74
C 91.3
(-1.5)
A 		42.6
(-3)
A 		42.3
(-3)
M 		238.7
(3)
P 		196
avr 101.3
(-0.5) 		48.6
(-3) 		47.8
(-3) 		177.1
(3) 		129

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 143
1 2 3 4 5 6 range
A 31.2
(-2.1)
A 		64.3
(1)
A 		85.7
(3)
P 		21.1
(-3)
A 		83.7
(2.8)
A 		24
(-2.7)
P 		65
B 79.8
(1.7)
P 		95
(3)
A 		85.1
(2.2)
A 		22.8
(-3)
A 		88.5
(2.5)
P 		83.9
(2.1)
P 		72
C 35.5
(-2.8)
A 		163.7
(3)
P 		31.1
(-3)
A 		30.2
(-3)
A 		41.8
(-2.5)
M 		55.2
(-1.9)
A 		134
avr 48.8
(-1.3) 		107.7
(3) 		67.3
(0.1) 		24.7
(-3) 		71.3
(0.4) 		54.4
(-0.9) 		83
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172244_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16286
Sequence Type Exemplar sequence
Representative Public ID C11E4.5 NCBI
Target Description C11E4.5 /REP_DB=WormBase Gene ID /WP=CE08105 /TR=Q93202 /GB=CAB02657.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000022590 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:857706:858059:1 11/11 None
GENEFINDER00000023134 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2381950:2386366:-1 11/11 None
GENEFINDER00000024882 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1999910:2002090:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_062430 3/11 Cross Hyb Matching Probes A 
GENEFINDER00000001664 6/11 Cross Hyb Matching Probes None
SNAP00000005190 3/11 Cross Hyb Matching Probes None
GENEFINDER00000005214 3/11 Cross Hyb Matching Probes None
T05A7.9 3/11 Cross Hyb Matching Probes R A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC26267 Hypothetical protein C40D2.4 [Caenorhabditis elegans] ref|NP_494148.1| C40D2.4 [Caenorhabditis elegans] 2.0E-70
blast AAC26277 Hypothetical protein F16G10.9 [Caenorhabditis elegans] ref|NP_494263.1| F16G10.9 [Caenorhabditis elegans] 6.0E-65
blast NP_508647 T14G12.6 [Caenorhabditis elegans] gb|AAA82438.1| Hypothetical protein T14G12.6 [Caenorhabditis elegans] 8.0E-48
blast AAC26276 Hypothetical protein F16G10.8 [Caenorhabditis elegans] ref|NP_494262.1| F16G10.8 [Caenorhabditis elegans] 2.0E-38
blast T19192 hypothetical protein C11E4.5 - Caenorhabditis elegans 7.0E-15
blast T19192 hypothetical protein C11E4.5 - Caenorhabditis elegans 4.0E-14
blast NP_492176 R11A5.5 [Caenorhabditis elegans] 2.0E-9
Protein Domains
Database ID Description E-Value
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 4.99999987368938E-6
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 0.0160000007599592
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 1.5E-7
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 1.5E-78
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 1.2E-4
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 6.5E-36
Pfam IPR001356 EMBL-EBI Homeobox 0.0010
Pfam IPR001356 EMBL-EBI Homeobox 0.85
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000024882 3 57-79,92-114,124-146
Sequence
Target Sequence 
>C. ELEGANS:172244_X_AT
gccacgaagggtctcgcaacgatgggtctcgccacgaagggtgactggccccgcccacaa
ctctcagtgactttaggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCACGAAGGGTCTCGCAACGATGG 205 275 67 Antisense
CCACGAAGGGTCTCGCAACGATGGG 206 275 68 Antisense
CACGAAGGGTCTCGCAACGATGGGT 513 197 69 Antisense
ACGAAGGGTCTCGCAACGATGGGTC 520 91 70 Antisense
CGAAGGGTCTCGCAACGATGGGTCT 197 251 71 Antisense
GGTCTCGCCACGAAGGGTGACTGGC 682 501 91 Antisense
GTCTCGCCACGAAGGGTGACTGGCC 394 471 92 Antisense
TCTCGCCACGAAGGGTGACTGGCCC 418 609 93 Antisense
CGCCCACAACTCTCAGTGACTTTAG 227 257 118 Antisense
GCCCACAACTCTCAGTGACTTTAGG 408 285 119 Antisense
CCCACAACTCTCAGTGACTTTAGGG 28 259 120 Antisense
Sequence Source Affymetrix Proprietary Database