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[172243_x_at]

Description Y41E3.5 /REP_DB=WormBase Gene ID /WP=CE18373 /TR=O62435 /GB=CAB09002.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 22      6grp_high1_10_10 > 02      4grp_highest_8_8 > 41      4grp_high_8_8 > 49      6grp_highest_nonorm > 12      6grp_total > 24      4grp_total > 62      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1499
1 2 3 4 range
A 2730.4
(3)
P 		1712.7
(-2.4)
P 		2214.6
(0.3)
P 		1591.6
(-3)
P 		1139
B 2380
(3)
P 		2153.5
(1.5)
P 		1820
(-0.8)
P 		1496.7
(-3)
P 		883
C 2575.1
(3)
P 		2308.6
(1.8)
P 		2251
(1.6)
P 		1231.6
(-3)
P 		1344
avr 2561.8
(3) 		2058.3
(0.3) 		2095.2
(0.5) 		1440
(-3) 		1122

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2648
1 2 3 4 5 6 range
A 2085.3
(1.8)
P 		2049.6
(1.7)
P 		2375.9
(3)
P 		1669.4
(0.1)
P 		924.9
(-3)
P 		973
(-2.8)
P 		1451
B 3573.2
(3)
P 		2554.2
(0.2)
P 		2973.1
(1.3)
P 		1506.4
(-2.7)
P 		1392.4
(-3)
P 		1471.5
(-2.8)
P 		2181
C 2971.5
(3)
P 		2167.9
(0.4)
P 		1929
(-0.3)
P 		1569.4
(-1.5)
P 		1381.5
(-2.1)
P 		1086.9
(-3)
P 		1885
avr 2876.7
(3) 		2257.2
(0.8) 		2426
(1.4) 		1581.7
(-1.6) 		1232.9
(-2.8) 		1177.1
(-3) 		1700
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 786
1 2 3 4 range
A 994.1
(3)
P 		371.8
(-1.9)
P 		578.9
(-0.3)
P 		233
(-3)
P 		761
B 759
(3)
P 		531.9
(-0.1)
P 		421.7
(-1.6)
P 		318.9
(-3)
P 		440
C 852.4
(3)
P 		663.7
(1.2)
P 		784.6
(2.4)
P 		207.7
(-3)
P 		645
avr 868.5
(3) 		522.5
(-0.4) 		595.1
(0.3) 		253.2
(-3) 		615

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1006
1 2 3 4 5 6 range
A 384.4
(-1.2)
P 		728.9
(3)
P 		517.4
(0.4)
P 		423.4
(-0.7)
P 		279.1
(-2.5)
P 		236.9
(-3)
P 		492
B 1243.3
(3)
P 		850.2
(0.2)
P 		722
(-0.7)
P 		399
(-3)
P 		565.7
(-1.8)
P 		548.7
(-1.9)
P 		844
C 1101.4
(3)
P 		661.5
(-0.4)
P 		491
(-1.7)
P 		315.6
(-3)
P 		447
(-2)
P 		363.9
(-2.6)
P 		786
avr 909.7
(3) 		746.9
(1.2) 		576.8
(-0.8) 		379.3
(-3) 		430.6
(-2.4) 		383.2
(-3) 		530
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172243_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9437
Sequence Type Exemplar sequence
Representative Public ID Y41E3.5 NCBI
Target Description Y41E3.5 /REP_DB=WormBase Gene ID /WP=CE18373 /TR=O62435 /GB=CAB09002.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069574
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y41E3.5 ENSEMBL cdna:pseudogene chromosome:CEL140:IV:15007765:15008135:1 gene:Y41E3.5 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_069574 8/11 Cross Hyb Matching Probes A 
SNAP00000001439 1/11 Cross Hyb Matching Probes None
GENEFINDER00000001473 1/11 Cross Hyb Matching Probes None
SNAP00000034328 8/11 Cross Hyb Matching Probes None
GENEFINDER00000034347 4/11 Cross Hyb Matching Probes None
R102.2 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15007771-15007902(+) 97.04 97.04
chrIV:10687680-10687814(+) 94.81 94.81
Public Domain and Genome References
Ensembl Y41E3.5
Sequence
Target Sequence 
>C. ELEGANS:172243_X_AT
atgtctaaggccgagttccaaaagttccacgatgagatgaaggcattgaagaacgccgga
aagcacgatgagttcgccaagaagttcgccgccaaggatgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTCTAAGGCCGAGTTCCAAAAGT 460 47 13 Antisense
CCGAGTTCCAAAAGTTCCACGATGA 530 263 23 Antisense
GTTCCAAAAGTTCCACGATGAGATG 669 439 27 Antisense
AGTTCCACGATGAGATGAAGGCATT 210 65 35 Antisense
GATGAAGGCATTGAAGAACGCCGGA 7 411 48 Antisense
GCATTGAAGAACGCCGGAAAGCACG 637 301 55 Antisense
GAAGAACGCCGGAAAGCACGATGAG 115 339 60 Antisense
ACGCCGGAAAGCACGATGAGTTCGC 480 91 65 Antisense
GGAAAGCACGATGAGTTCGCCAAGA 203 527 70 Antisense
GATGAGTTCGCCAAGAAGTTCGCCG 109 411 79 Antisense
CAAGAAGTTCGCCGCCAAGGATGTT 348 183 90 Antisense
Sequence Source Affymetrix Proprietary Database