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[172242_x_at]

Description F36D1.4 /REP_DB=WormBase Gene ID /WP=CE18665 /TR=Q9XV40 /GB=CAB04307.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 24      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 6.7
(-3)
A 		47.3
(-0.5)
A 		56.2
(0)
A 		104.6
(3)
P 		98
B 8.6
(-3)
A 		37.4
(3)
A 		17.3
(-1.2)
A 		10.7
(-2.6)
A 		29
C 9.8
(-3)
A 		11.7
(-2.8)
A 		37.7
(-0.1)
A 		67.7
(3)
A 		58
avr 8.4
(-3) 		32.1
(-0.3) 		37.1
(0.3) 		61
(3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 116
1 2 3 4 5 6 range
A 17.4
(-2.3)
A 		7.8
(-3)
A 		14.7
(-2.5)
A 		16.7
(-2.4)
A 		28.7
(-1.5)
A 		93.6
(3)
P 		86
B 4.9
(-2.9)
A 		6.5
(-2.9)
A 		3.9
(-3)
A 		5.7
(-2.9)
A 		68.4
(0.3)
P 		120
(3)
P 		116
C 37.4
(-0.2)
A 		4.8
(-3)
A 		18.8
(-1.8)
A 		7.5
(-2.8)
A 		75
(3)
P 		70.3
(2.6)
P 		70
avr 19.9
(-2.1) 		6.4
(-3) 		12.5
(-2.6) 		10
(-2.8) 		57.4
(0.5) 		94.6
(3) 		88
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 2.4
(-3)
A 		10.3
(0.7)
A 		14.7
(2.7)
A 		15.3
(3)
P 		13
B 2.8
(-2.6)
A 		9.2
(3)
A 		4
(-1.5)
A 		2.3
(-3)
A 		7
C 3.3
(-3)
A 		3.4
(-2.9)
A 		13.1
(3)
A 		11.4
(2)
A 		10
avr 2.8
(-3) 		7.6
(0.7) 		10.6
(3) 		9.7
(2.3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 3.2
(-2.9)
A 		2.8
(-3)
A 		3.2
(-2.9)
A 		4.2
(-2.6)
A 		8.7
(-1.2)
A 		22.8
(3)
P 		20
B 1.7
(-2.9)
A 		2.2
(-2.8)
A 		1
(-3)
A 		1.5
(-2.9)
A 		27.8
(0.7)
P 		44.7
(3)
P 		44
C 13.9
(0.3)
A 		1.5
(-3)
A 		4.8
(-2.1)
A 		1.5
(-3)
A 		24.3
(3)
P 		23.5
(2.8)
P 		23
avr 6.3
(-2.1) 		2.2
(-3) 		3
(-2.8) 		2.4
(-3) 		20.3
(0.9) 		30.3
(3) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172242_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1747
Sequence Type Exemplar sequence
Representative Public ID F36D1.4 NCBI
Target Description F36D1.4 /REP_DB=WormBase Gene ID /WP=CE18665 /TR=Q9XV40 /GB=CAB04307.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060494(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060494 NCBI Caenorhabditis elegans F36D1.4 (F36D1.4) mRNA, complete cds. 11/11 None
SNAP00000013623 ENSEMBL cdna:SNAP chromosome:CEL140:I:11279832:11280470:1 11/11 None
GENEFINDER00000013626 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11279832:11281543:1 11/11 None
F36D1.4 ENSEMBL cdna:known chromosome:CEL140:I:11279832:11280470:1 gene:F36D1.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11279762-11280401(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F36D1.4
Entrez Gene 185346 Entrez gene
SwissProt Q9XV40 EMBL-EBI
WormBase CE18665 Wormbase
Sequence
Target Sequence 
>C. ELEGANS:172242_X_AT
cgccgggatattctccatacgttgcccatggttccccatatggtgctccgatgtatggat
ccccgtatggatacggatacgcctcacctgcctatgtgcaaccagtcggaccgccggttt
atgttggacacggaggatattataat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCCGGGATATTCTCCATACGTTGC 113 255 20 Antisense
CGGGATATTCTCCATACGTTGCCCA 115 243 23 Antisense
TCCCCATATGGTGCTCCGATGTATG 148 597 52 Antisense
ATGGTGCTCCGATGTATGGATCCCC 98 51 59 Antisense
GATGTATGGATCCCCGTATGGATAC 245 409 69 Antisense
GTATGGATACGGATACGCCTCACCT 648 453 84 Antisense
CCAGTCGGACCGCCGGTTTATGTTG 498 263 121 Antisense
TCGGACCGCCGGTTTATGTTGGACA 616 593 125 Antisense
GACCGCCGGTTTATGTTGGACACGG 304 285 128 Antisense
GCCGGTTTATGTTGGACACGGAGGA 41 281 132 Antisense
TGTTGGACACGGAGGATATTATAAT 287 473 141 Antisense
Sequence Source Affymetrix Proprietary Database