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[172241_x_at]

Description C37A5.8 /REP_DB=WormBase Gene ID /WP=CE17532 /TR=O62093 /GB=CAB07335.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 0      4grp_high_8_8 > 26      6grp_total > 09      4grp_total > 46      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 148
1 2 3 4 range
A 207
(3)
P 		126.8
(-0.2)
P 		58.7
(-3)
A 		71.8
(-2.5)
A 		148
B 181
(3)
P 		95.6
(-3)
A 		104.1
(-2.4)
P 		122.2
(-1.1)
P 		85
C 185.2
(3)
P 		138.2
(0.4)
P 		82.2
(-2.8)
P 		78.2
(-3)
A 		107
avr 191.1
(3) 		120.2
(-0.9) 		81.7
(-3) 		90.7
(-2.5) 		109

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 203
1 2 3 4 5 6 range
A 235.5
(2)
P 		67.2
(-3)
P 		131.3
(-1.1)
P 		269.9
(3)
P 		160.9
(-0.2)
P 		130.4
(-1.1)
P 		203
B 156.2
(0.6)
P 		97.2
(-3)
P 		132.3
(-0.9)
P 		196.4
(3)
P 		133.8
(-0.8)
P 		105.5
(-2.5)
P 		99
C 197.1
(1.8)
P 		109.5
(-3)
A 		156.6
(-0.4)
P 		218
(3)
P 		127.7
(-2)
P 		129.9
(-1.9)
P 		109
avr 196.3
(1.6) 		91.3
(-3) 		140.1
(-0.9) 		228.1
(3) 		140.8
(-0.8) 		121.9
(-1.7) 		137
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 75.4
(3)
P 		27.5
(-1.4)
P 		15.3
(-2.6)
A 		10.5
(-3)
A 		65
B 57.7
(3)
P 		23.6
(-3)
A 		24.1
(-2.9)
P 		26
(-2.6)
P 		34
C 61.3
(3)
P 		39.7
(0.3)
P 		28.6
(-1.1)
P 		13.2
(-3)
A 		48
avr 64.8
(3) 		30.3
(-1.3) 		22.7
(-2.2) 		16.6
(-3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 43.4
(-0.4)
P 		23.9
(-3)
P 		28.6
(-2.4)
P 		68.4
(3)
P 		48.6
(0.3)
P 		31.8
(-1.9)
P 		45
B 54.4
(3)
P 		32.4
(-2.9)
P 		32.1
(-3)
P 		52
(2.4)
P 		54.3
(3)
P 		39.4
(-1)
P 		22
C 73.1
(3)
P 		33.4
(-3)
A 		39.9
(-2)
P 		43.8
(-1.4)
P 		41.3
(-1.8)
P 		43.5
(-1.5)
P 		40
avr 57
(3) 		29.9
(-3) 		33.5
(-2.2) 		54.7
(2.5) 		48.1
(1) 		38.2
(-1.2) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172241_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.857
Sequence Type Exemplar sequence
Representative Public ID C37A5.8 NCBI
Target Description C37A5.8 /REP_DB=WormBase Gene ID /WP=CE17532 /TR=O62093 /GB=CAB07335.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061070(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061070 NCBI Caenorhabditis elegans C37A5.8 (C37A5.8) mRNA, complete cds. 11/11 None
SNAP00000011860 ENSEMBL cdna:SNAP chromosome:CEL140:I:14165773:14166087:1 11/11 None
GENEFINDER00000011866 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14165773:14166087:1 11/11 None
C37A5.8 ENSEMBL cdna:known chromosome:CEL140:I:14165773:14166087:1 gene:C37A5.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000011855 4/11 Cross Hyb Matching Probes None
GENEFINDER00000011869 4/11 Cross Hyb Matching Probes None
SNAP00000011856 6/11 Cross Hyb Matching Probes None
GENEFINDER00000011864 6/11 Cross Hyb Matching Probes None
GENEFINDER00000018250 1/11 Cross Hyb Matching Probes None
C37A5.6 4/11 Cross Hyb Matching Probes None
C37A5.5 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14165703-14166018(+) 100.0 100.0
chrI:14159916-14160231(+) 98.15 98.15
Public Domain and Genome References
Gene Title
Ensembl C37A5.8
Entrez Gene 183286 Entrez gene
SwissProt O62093 EMBL-EBI
WormBase CE17532 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07335 Hypothetical protein C37A5.8 [Caenorhabditis elegans] ref|NP_493471.1| C37A5.8 [Caenorhabditis elegans] 2.0E-13
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493471.1 1 4-21
C37A5.8 1 4-21
SNAP00000011860 1 4-21
GENEFINDER00000011866 1 4-21
Sequence
Target Sequence 
>C. ELEGANS:172241_X_AT
atgaaattcgtttctctattcctccttgccatcctcgccatcggagctctttccgacact
gtcaccaccaccaaaatgaagatggaaatgaagccagtggctatgccagctcagcatcaa
accgagatgcattctgaaatggactctgaagctccacacacccgtaaccgtcgttgggga
tactatggaggatacggtggatacggtagaatgggatacggtgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAAATTCGTTTCTCTATTCCTCC 318 45 13 Antisense
CACTGTCACCACCACCAAAATGAAG 272 199 69 Antisense
TGAAGCCAGTGGCTATGCCAGCTCA 580 573 101 Antisense
GGCTATGCCAGCTCAGCATCAAACC 165 539 111 Antisense
TGCCAGCTCAGCATCAAACCGAGAT 163 587 116 Antisense
ATCAAACCGAGATGCATTCTGAAAT 523 27 128 Antisense
GAGATGCATTCTGAAATGGACTCTG 10 397 136 Antisense
AAATGGACTCTGAAGCTCCACACAC 423 121 149 Antisense
TAACCGTCGTTGGGGATACTATGGA 586 625 177 Antisense
CTATGGAGGATACGGTGGATACGGT 361 215 195 Antisense
GATACGGTAGAATGGGATACGGTGG 278 415 212 Antisense
Sequence Source Affymetrix Proprietary Database